Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG718_RS24540 Genome accession   NZ_CP108081
Coordinates   5547861..5548859 (-) Length   332 a.a.
NCBI ID   WP_143638824.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5542861..5553859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS24525 (OG718_24505) - 5543404..5544165 (-) 762 WP_143638832.1 DeoR/GlpR family DNA-binding transcription regulator -
  OG718_RS24530 (OG718_24510) - 5544385..5545911 (-) 1527 WP_143638828.1 MFS transporter -
  OG718_RS24535 (OG718_24515) - 5546000..5546968 (+) 969 WP_143638826.1 WYL domain-containing protein -
  OG718_RS24540 (OG718_24520) rpoS 5547861..5548859 (-) 999 WP_143638824.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG718_RS24545 (OG718_24525) - 5549038..5549556 (+) 519 WP_306938581.1 GNAT family N-acetyltransferase -
  OG718_RS24550 (OG718_24530) - 5549657..5550457 (-) 801 WP_186001233.1 class III extradiol ring-cleavage dioxygenase -
  OG718_RS24555 (OG718_24535) - 5550598..5551101 (+) 504 WP_143638821.1 MarR family transcriptional regulator -
  OG718_RS24560 (OG718_24540) - 5551352..5552890 (-) 1539 WP_143638819.1 MFS transporter -
  OG718_RS24565 (OG718_24545) - 5553048..5553692 (-) 645 WP_143638817.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37246.10 Da        Isoelectric Point: 5.1426

>NTDB_id=653005 OG718_RS24540 WP_143638824.1 5547861..5548859(-) (rpoS) [Streptomyces sp. NBC_00258]
MATRAVARRKSASGGSDAARSVRVVGGEIADRDLVGMYLDEIARTPLLDAAKEVDLSQTIEAGVYAQQILDGEVTDTKVK
ASREELEALVADSERAKDIFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGREPEPSEIAAELDTKPERVVDVLDWARDPVSLNMAVDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=653005 OG718_RS24540 WP_143638824.1 5547861..5548859(-) (rpoS) [Streptomyces sp. NBC_00258]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCTCAGGCGGAAGCGACGCGGCACGCAGTGTTCGCGTCGTAGGCGG
CGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAGATCGCGCGCACACCGCTGCTCGACGCCGCCAAGGAAG
TGGACCTCTCCCAGACCATCGAGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGAGGTCACCGACACAAAGGTGAAG
GCCTCCCGCGAGGAGCTCGAAGCGCTGGTCGCCGACTCCGAGCGGGCCAAGGACATCTTCATCCGGTCGAACCTCCGCCT
GGTCGTGGCGGTCGCCCGTCGCTACCCGCGCAGTGGCCTGCCGCTCCTGGACCTGATCCAGGAGGGGAACGCGGGCCTGG
TCCGGGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGTTCCATCGCCGACCAGTCCCGCACCATCCGCCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGTGAGCCGGAGCCCTCGGAGATCGCCGCGGAGCTGGACACGAAGCCGGAGC
GCGTGGTCGACGTGCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTGGACGACGACGGTGACACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCCGTCTCGCCCGAGCAGTCCGTGCTCACGCTGCTGCGCAGCGAGGAGCTGGACGA
CCTCATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGAGGACGGCCGGGAGCGCACGC
TCACCGAGGTCGGCAAGGAGCACGGCCTCACGCGCGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGACGCCGCCGCGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.361

0.364