Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6D56_RS04120 Genome accession   NZ_CP091650
Coordinates   830820..831416 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain TAKPN-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 825820..836416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6D56_RS04105 helD 826028..828082 (-) 2055 WP_004176653.1 DNA helicase IV -
  L6D56_RS04110 - 828207..828653 (+) 447 WP_002898425.1 YccF domain-containing protein -
  L6D56_RS04115 yccS 828671..830806 (+) 2136 WP_002898422.1 YccS family putative transporter -
  L6D56_RS04120 sxy/tfoX 830820..831416 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  L6D56_RS04125 sulA 831765..832274 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  L6D56_RS04130 ompA 832627..833697 (+) 1071 WP_002898408.1 porin OmpA -
  L6D56_RS04135 matP 833829..834281 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  L6D56_RS04140 - 834467..836224 (+) 1758 WP_032429922.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=653001 L6D56_RS04120 WP_004150836.1 830820..831416(-) (sxy/tfoX) [Klebsiella pneumoniae strain TAKPN-1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=653001 L6D56_RS04120 WP_004150836.1 830820..831416(-) (sxy/tfoX) [Klebsiella pneumoniae strain TAKPN-1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51