Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   L3V59_RS11625 Genome accession   NZ_CP091646
Coordinates   2470372..2471748 (-) Length   458 a.a.
NCBI ID   WP_122946708.1    Uniprot ID   -
Organism   Burkholderia aenigmatica strain CMCC(B)23010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2465372..2476748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V59_RS11605 (L3V59_11605) cls 2465692..2467131 (+) 1440 WP_122945712.1 cardiolipin synthase -
  L3V59_RS11610 (L3V59_11610) - 2467192..2467671 (-) 480 WP_089425699.1 glutathione peroxidase -
  L3V59_RS11615 (L3V59_11615) - 2467808..2469739 (+) 1932 WP_237432590.1 ATP-binding cassette domain-containing protein -
  L3V59_RS11620 (L3V59_11620) - 2469959..2470225 (-) 267 WP_039342663.1 DUF2866 domain-containing protein -
  L3V59_RS11625 (L3V59_11625) radA 2470372..2471748 (-) 1377 WP_122946708.1 DNA repair protein RadA Machinery gene
  L3V59_RS11630 (L3V59_11630) alr 2471760..2472830 (-) 1071 WP_122945714.1 alanine racemase -
  L3V59_RS11635 (L3V59_11635) lplT 2473049..2474356 (+) 1308 WP_122945715.1 lysophospholipid transporter LplT -
  L3V59_RS11640 (L3V59_11640) thiD 2474415..2475224 (+) 810 WP_237432591.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L3V59_RS11645 (L3V59_11645) - 2475243..2476208 (-) 966 WP_237432592.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48812.23 Da        Isoelectric Point: 6.9499

>NTDB_id=652995 L3V59_RS11625 WP_122946708.1 2470372..2471748(-) (radA) [Burkholderia aenigmatica strain CMCC(B)23010]
MAKQKTVYVCSECGGQTPKWQGQCPSCQAWNTLVESVAESPAAHRFQSLAKRAPVQRLVDIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLADIASQRRALYISGEESAAQIALRAQRLALLDGGAVADELKLLAEIQLEKIQ
AAIDAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQVVPGSCVLVTQEGTRPLLVEVQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTSALIPKANAPKQPIEGLNVMAVDRLEQAIDRVRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=652995 L3V59_RS11625 WP_122946708.1 2470372..2471748(-) (radA) [Burkholderia aenigmatica strain CMCC(B)23010]
GTGGCCAAACAGAAAACCGTATACGTCTGCAGCGAGTGCGGCGGACAGACCCCGAAGTGGCAGGGCCAATGCCCGTCGTG
CCAGGCCTGGAACACGCTGGTTGAATCGGTCGCCGAATCGCCGGCGGCCCATCGTTTCCAGTCGCTCGCGAAGCGGGCGC
CCGTCCAGCGTCTCGTCGACATCGAAGCGGCTGACGTGCCGCGCTTCTCGACCGGCATCGGTGAATTCGACCGCGTGCTC
GGCGGCGGGCTGGTCGCCGGCGGCGTCGTGCTGATCGGCGGCGATCCGGGCATCGGCAAGTCGACGCTGCTGCTGCAGTC
GCTCGCGGACATCGCGAGCCAGCGGCGCGCGCTCTATATCAGCGGTGAGGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AACGGCTTGCGCTGCTCGACGGCGGTGCGGTGGCGGACGAACTGAAGCTGCTCGCCGAGATCCAGCTCGAGAAGATCCAG
GCCGCGATCGACGCGGAACGGCCGGACGTGGCCGTCATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACGTCGGC
GCCGGGCTCGGTCGCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCATCGCGAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGGCACGTGACGAAGGAAGGCAACCTGGCCGGCCCGCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTACTTC
GAAGGCGACACGCATTCGTCGTTCCGGCTCGTGCGTGCGTTCAAGAACCGCTTCGGCGCGGTCAACGAACTTGGCGTGTT
CGCGATGACCGAGCGCGGGCTGCGCGGTGTCGCGAATCCGTCCGCGCTGTTCCTGTCGCAGCACGAACAGGTCGTGCCCG
GCTCGTGCGTGCTCGTCACGCAGGAAGGCACGCGGCCGCTGCTCGTCGAAGTCCAGGCGCTCGTCGACACCGCGCACGTG
CCGAACCCGCGCCGGCTCGCGGTCGGCCTCGAGCAGAACCGGCTCGCGATGCTGCTCGCGGTGCTGCACCGGCACGCGGG
CATCGCGTGCTTCGACCAGGACGTGTTCCTCAATGCAGTCGGCGGCGTGAAGATCACCGAGCCGGCTGCCGACCTCGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGGCGCTGCCGAAGGGGCTGATCGTGTTCGGCGAAGTGGGGCTGGCG
GGCGAGATCCGGCCGTCGCCGCGCGGGCAGGAGCGCTTGCGGGAGGCGGCGAAGCTCGGCTTCACGTCCGCGCTGATTCC
GAAGGCGAATGCGCCGAAGCAGCCGATCGAAGGGCTGAACGTGATGGCCGTCGATCGGCTCGAACAGGCGATCGACCGCG
TGCGCGATCTCGAGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.241

100

0.496
  radA Streptococcus pneumoniae Rx1

46.638

100

0.469
  radA Streptococcus pneumoniae R6

46.638

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.638

100

0.469
  radA Streptococcus pneumoniae D39

46.638

100

0.469
  radA Streptococcus mitis SK321

46.943

100

0.469
  radA Streptococcus mitis NCTC 12261

46.608

99.782

0.465