Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG718_RS19085 Genome accession   NZ_CP108081
Coordinates   4315057..4315725 (-) Length   222 a.a.
NCBI ID   WP_143640527.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4310057..4320725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS19075 (OG718_19055) glgX 4311206..4313497 (+) 2292 WP_143640529.1 glycogen debranching protein GlgX -
  OG718_RS19080 (OG718_19060) - 4313628..4315034 (+) 1407 WP_328844666.1 sulfatase-like hydrolase/transferase -
  OG718_RS19085 (OG718_19065) vraR 4315057..4315725 (-) 669 WP_143640527.1 response regulator transcription factor Regulator
  OG718_RS19090 (OG718_19070) - 4315715..4316968 (-) 1254 WP_143640526.1 sensor histidine kinase -
  OG718_RS19095 (OG718_19075) - 4316994..4317758 (-) 765 WP_306937804.1 ABC transporter permease -
  OG718_RS19100 (OG718_19080) - 4317755..4318705 (-) 951 WP_186001297.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23257.39 Da        Isoelectric Point: 5.1301

>NTDB_id=652991 OG718_RS19085 WP_143640527.1 4315057..4315725(-) (vraR) [Streptomyces sp. NBC_00258]
MTDDATDDGTEEGTISLLVVDDHPVVRDGLRGMFESAPGFRVLGEASNGVEAVGKAAALDPDVILMDLRMPGGGGVEAIA
HLTRAGARAKILVLTTYDTDSDTIPAIEAGATGYLLKDAPRDELFTAVRAAAQGRTVLSPAVASRLVSAVRTPRAPGNEP
LSAREREVLTLVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGILG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652991 OG718_RS19085 WP_143640527.1 4315057..4315725(-) (vraR) [Streptomyces sp. NBC_00258]
ATGACAGATGACGCGACAGACGACGGCACGGAAGAGGGGACGATCTCCCTCCTCGTCGTGGACGACCATCCCGTCGTACG
GGACGGTCTGCGCGGCATGTTCGAGTCCGCGCCCGGATTCCGCGTACTGGGAGAGGCGTCGAACGGCGTCGAGGCGGTCG
GGAAGGCCGCCGCGCTCGACCCCGACGTGATCCTCATGGACCTGCGCATGCCGGGCGGCGGGGGTGTCGAGGCGATCGCG
CACCTCACCCGCGCGGGCGCCCGCGCCAAGATCCTCGTCCTGACGACGTACGACACCGACTCCGACACGATCCCCGCGAT
CGAGGCGGGCGCGACGGGTTACCTCCTCAAGGACGCGCCCCGCGACGAGCTCTTCACCGCCGTACGGGCGGCCGCCCAGG
GCCGTACGGTCCTCTCCCCGGCCGTGGCCTCCCGGCTGGTCTCCGCGGTCCGTACGCCCAGGGCCCCCGGCAACGAGCCG
CTCTCCGCCCGCGAACGCGAGGTCCTGACCCTGGTCGCCAAGGGCACGTCCAACCGCGAGATCGCCCGCGAACTCTTCAT
CAGCGAGGCGACGGTGAAGACCCACCTCACCCACCTGTACGCCAAGCTGGGCGTCAAGGACCGGGCGGCGGCGGTGGCGA
CGGCCTACGACCGGGGAATCCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(18-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.462

93.694

0.36