Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   L4998_RS07120 Genome accession   NZ_CP091644
Coordinates   1372149..1373330 (-) Length   393 a.a.
NCBI ID   WP_237437137.1    Uniprot ID   -
Organism   Campylobacter coli strain YH504     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1367149..1378330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS07095 (L4998_07095) fliL 1368286..1368822 (+) 537 WP_002779164.1 flagellar basal body-associated protein FliL -
  L4998_RS07100 (L4998_07100) acpS 1368822..1369169 (+) 348 WP_002779165.1 holo-ACP synthase -
  L4998_RS07105 (L4998_07105) - 1369173..1369595 (-) 423 WP_002779166.1 hypothetical protein -
  L4998_RS07110 (L4998_07110) - 1369592..1370962 (-) 1371 WP_002785675.1 cytochrome P450 -
  L4998_RS07115 (L4998_07115) - 1370959..1372080 (-) 1122 WP_237437136.1 DUF829 domain-containing protein -
  L4998_RS07120 (L4998_07120) kpsS 1372149..1373330 (-) 1182 WP_237437137.1 capsule biosynthesis protein Regulator
  L4998_RS07125 (L4998_07125) - 1373327..1375354 (-) 2028 WP_237437138.1 capsular polysaccharide biosynthesis protein -
  L4998_RS09630 (L4998_09625) - 1375390..1375739 (-) 350 Protein_1385 hypothetical protein -
  L4998_RS07135 (L4998_07135) cysC 1376864..1377451 (-) 588 WP_002797505.1 adenylyl-sulfate kinase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46441.12 Da        Isoelectric Point: 10.0343

>NTDB_id=652978 L4998_RS07120 WP_237437137.1 1372149..1373330(-) (kpsS) [Campylobacter coli strain YH504]
MKFSDKIKKEFSGKNVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFFFYPSGKRCKCDKKDLENFYENFFKEKKI
DAIVMYNDCRLIHTKAIKVAKELGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNISTKESIKEIPGGFKF
MAFSAFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFSSLYRKYLYKFTEKKLNQKIYSLEKKYFLAVLQVYNDTQIKHH
YKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=652978 L4998_RS07120 WP_237437137.1 1372149..1373330(-) (kpsS) [Campylobacter coli strain YH504]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAAATGTCTTGCTTTTACAAGGACCTGTGGGTACTTTTTT
TCACCGCCTTGCTATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAACGGAGGGGATTTTTTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGATAAAAAGGATCTTGAAAATTTCTATGAAAATTTTTTCAAAGAAAAAAAAATA
GATGCTATTGTGATGTATAATGATTGTCGTTTGATCCATACAAAAGCCATCAAAGTAGCTAAGGAGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATTTCTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTGCTTTTTTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGTTCTTTATACAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTGTTTTGCAAGTTTATAATGATACGCAAATTAAGCACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTGT
CTTTAAACATCATCCTATGGACAGGGGATATAGAAATTATTCTAAACTGATAAATGAGCTAAGCCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCATTTTACAATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

88.265

99.746

0.88