Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG718_RS13795 Genome accession   NZ_CP108081
Coordinates   3059240..3060265 (+) Length   341 a.a.
NCBI ID   WP_328844266.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3054240..3065265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS13780 (OG718_13775) - 3055637..3056524 (-) 888 WP_328844263.1 carbohydrate ABC transporter permease -
  OG718_RS13785 (OG718_13780) - 3056527..3057435 (-) 909 WP_328844264.1 sugar ABC transporter permease -
  OG718_RS13790 (OG718_13785) - 3057531..3058904 (-) 1374 WP_328844265.1 extracellular solute-binding protein -
  OG718_RS13795 (OG718_13790) cytR 3059240..3060265 (+) 1026 WP_328844266.1 LacI family DNA-binding transcriptional regulator Regulator
  OG718_RS13800 (OG718_13795) - 3060311..3061420 (-) 1110 WP_328844267.1 amidohydrolase family protein -
  OG718_RS13805 (OG718_13800) - 3061459..3062517 (-) 1059 WP_260695477.1 LacI family DNA-binding transcriptional regulator -
  OG718_RS13810 (OG718_13805) - 3062758..3063762 (+) 1005 WP_328844268.1 ABC transporter substrate-binding protein -
  OG718_RS13815 (OG718_13810) - 3063759..3064607 (+) 849 WP_143640867.1 ABC transporter permease -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36328.40 Da        Isoelectric Point: 6.3444

>NTDB_id=652970 OG718_RS13795 WP_328844266.1 3059240..3060265(+) (cytR) [Streptomyces sp. NBC_00258]
MAGARLKDVAERAGVSIKTVSNVVRGEIRVAEQTRQRVLRAIAELDYQPNASARHLRTGRSGIIALAVPELVAPYFAELA
AEVIAAAKKRGCTVLIEDTGGDPAEELRIACGLSDPLIDGVLLSPLSLDEAMLATRERRVPLVLLGEQSYRIPADHVLID
NSAAAREATEHLLGLGRRRIGVIGQPSDRAHATTVQRMHGFLTALHAAGVPHDPRLAPDTVAFTRADGASAMRVLLGLDE
PPDAVFCFSDLLASGAVRAAHEHGLRVPRDLAVVGFDDIQETGYSVPSLTTVSPNKREIAELAVDAVLQRITTDAEAPHT
RLTAGYSLVVRESTQPSSPTG

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=652970 OG718_RS13795 WP_328844266.1 3059240..3060265(+) (cytR) [Streptomyces sp. NBC_00258]
ATGGCAGGTGCACGCCTCAAGGACGTCGCGGAACGCGCGGGCGTTTCGATCAAGACGGTGTCGAACGTCGTACGGGGCGA
GATCCGTGTCGCGGAGCAGACCCGGCAGCGGGTGCTGCGCGCGATCGCCGAGCTCGACTACCAGCCCAACGCCTCCGCAC
GCCACTTGCGCACCGGCCGCAGCGGCATCATCGCGCTGGCCGTCCCCGAGCTGGTCGCACCGTACTTCGCGGAGCTGGCC
GCGGAGGTCATCGCGGCCGCCAAGAAGCGGGGCTGCACCGTGCTGATCGAGGACACCGGCGGAGACCCCGCGGAGGAACT
CCGTATCGCCTGCGGCCTGAGCGACCCGCTCATCGACGGTGTGCTGCTCAGCCCGCTCAGCCTCGACGAGGCGATGCTCG
CCACCCGCGAGCGCCGCGTGCCCCTCGTACTCCTGGGAGAGCAGTCGTACCGGATCCCGGCGGACCACGTGCTGATCGAC
AACTCCGCGGCGGCGCGAGAGGCGACCGAGCACCTGCTCGGGCTCGGCCGCCGGCGCATCGGAGTCATCGGCCAGCCGTC
GGACCGGGCGCATGCGACGACGGTGCAGCGCATGCACGGCTTTCTGACCGCGCTGCATGCCGCGGGTGTGCCGCACGACC
CCCGACTGGCCCCGGACACCGTGGCGTTCACCCGCGCCGACGGCGCCTCCGCGATGCGGGTCCTGCTCGGCCTGGACGAA
CCACCGGACGCGGTCTTCTGCTTCAGCGACCTGCTCGCCTCCGGCGCGGTGCGCGCGGCACACGAACACGGCCTTCGGGT
GCCGCGTGACCTGGCGGTCGTGGGCTTCGACGACATCCAGGAGACCGGCTACAGCGTGCCGTCACTGACCACCGTGTCGC
CCAACAAACGGGAGATCGCCGAACTGGCGGTGGACGCGGTGCTGCAGAGAATCACGACCGACGCGGAGGCCCCTCACACG
AGACTCACCGCGGGGTATTCACTGGTGGTGCGGGAGAGCACGCAGCCGAGTTCGCCGACGGGGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-334)

Bacterial regulatory proteins, lacI family (LacI)

(6-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

38.166

99.12

0.378
  cytR Vibrio parahaemolyticus RIMD 2210633

37.612

98.24

0.37