Detailed information NTG0652970

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: L4998_RS05680
• Genome accession: NZ_CP091644
• Coordinates: 1090081..1091025 (+)
• Length: 314 a.a.
• NCBI ID: WP_002796919.1
• Uniprot ID: -
• Organism: Campylobacter coli strain YH504
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1085081..1096025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L4998_RS05650 (L4998_05650)	-	1085093..1086292 (-)	1200	WP_057980448.1	glycosyltransferase family 8 protein	-
L4998_RS05655 (L4998_05655)	-	1086420..1086839 (+)	420	WP_237437126.1	hypothetical protein	-
L4998_RS05660 (L4998_05660)	-	1086830..1087723 (+)	894	WP_237437127.1	CDP-glycerol glycerophosphotransferase family protein	-
L4998_RS05665 (L4998_05665)	-	1087720..1088769 (+)	1050	WP_057041879.1	asparagine synthase-related protein	-
L4998_RS05670 (L4998_05670)	-	1088772..1089188 (+)	417	WP_002796922.1	adenylyltransferase/cytidyltransferase family protein	-
L4998_RS05675 (L4998_05675)	-	1089207..1090022 (-)	816	WP_057991291.1	glycosyltransferase family 2 protein	-
L4998_RS05680 (L4998_05680)	waaF	1090081..1091025 (+)	945	WP_002796919.1	lipopolysaccharide heptosyltransferase II	Regulator
L4998_RS05685 (L4998_05685)	-	1091008..1092462 (-)	1455	WP_002791237.1	hypothetical protein	-
L4998_RS05690 (L4998_05690)	gmhA	1092474..1093034 (-)	561	WP_002796916.1	D-sedoheptulose 7-phosphate isomerase	-
L4998_RS05695 (L4998_05695)	rfaE1	1093031..1094416 (-)	1386	WP_002796914.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
L4998_RS05700 (L4998_05700)	rfaD	1094409..1095362 (-)	954	WP_101348773.1	ADP-glyceromanno-heptose 6-epimerase	-
L4998_RS05705 (L4998_05705)	-	1095359..1095922 (-)	564	WP_002777235.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-

Sequence

Protein

• Length: 314 a.a.
• Molecular weight: 36158.61 Da
• Isoelectric Point: 10.1355

>NTDB_id=652970 L4998_RS05680 WP_002796919.1 1090081..1091025(+) (waaF) [Campylobacter coli strain YH504]
MKIFIHLPTWLGDAVMASSALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELDKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKICPLKHHKCMKDLKPEMVLEKLKFDT

Nucleotide

• Length: 945 bp

>NTDB_id=652970 L4998_RS05680 WP_002796919.1 1090081..1091025(+) (waaF) [Campylobacter coli strain YH504]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGTAAAGAACTTGATAAAATCGATCTTAGCTTCACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTGA
AAAATCTTTGCAACAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCATATAGCTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAATGGTTTTAGAAAAATTAAAATTTGATACTTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (96-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	92.605	99.045	0.917