Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG718_RS06220 Genome accession   NZ_CP108081
Coordinates   1306856..1307872 (+) Length   338 a.a.
NCBI ID   WP_328843532.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301856..1312872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS06205 (OG718_06195) - 1303205..1304149 (-) 945 WP_328843530.1 carbohydrate ABC transporter permease -
  OG718_RS06210 (OG718_06200) - 1304163..1305146 (-) 984 WP_260695838.1 sugar ABC transporter permease -
  OG718_RS06215 (OG718_06205) - 1305263..1306570 (-) 1308 WP_328843531.1 extracellular solute-binding protein -
  OG718_RS06220 (OG718_06210) cytR 1306856..1307872 (+) 1017 WP_328843532.1 LacI family DNA-binding transcriptional regulator Regulator
  OG718_RS06225 (OG718_06215) - 1308015..1309553 (-) 1539 WP_328843533.1 HAMP domain-containing sensor histidine kinase -
  OG718_RS06230 (OG718_06220) - 1309550..1310293 (-) 744 WP_306935507.1 response regulator transcription factor -
  OG718_RS06235 (OG718_06225) - 1310344..1312548 (-) 2205 WP_328843534.1 glycosyltransferase family 39 protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36204.05 Da        Isoelectric Point: 6.0577

>NTDB_id=652958 OG718_RS06220 WP_328843532.1 1306856..1307872(+) (cytR) [Streptomyces sp. NBC_00258]
MEGRQRPTIKTVAARAGVGRTTVSRVINGSELVSDKAKAAVLAAIAELNYVPNSVARGLVTNRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAKTRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPAE
SLSHVHSDNAGGASAAVRHLLLRGRRTIATISGPLDMDVARSRLQGWREALEKAGHEATEHLVVSADFTEEGGEAAMRSL
LEQLPTLDAVFVASDVMAAGALAELRRQGRSVPGDVAVVGFDDSIIARHSNPPLTSVRQPIEEIGNTIARILLEEISNPE
EPRQHVVLPTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=652958 OG718_RS06220 WP_328843532.1 1306856..1307872(+) (cytR) [Streptomyces sp. NBC_00258]
ATGGAGGGCAGGCAACGCCCGACCATCAAGACCGTGGCCGCGCGCGCCGGTGTCGGACGTACCACGGTTTCACGAGTCAT
CAACGGCTCGGAGCTCGTCAGCGACAAGGCCAAGGCCGCCGTGCTCGCCGCCATCGCCGAGCTGAACTACGTCCCGAACT
CGGTTGCCCGGGGGCTCGTGACGAACCGGACGAACTCCGTGGCCCTGGTGATTCCCGAGTCCGAAAGCAGACTGGGCTCC
GAGCCCTACTTCTCGGCGGTCATCCGCGGGGTCAGCACCGCTCTGGCCAAGACCCGGACGCAGCTCCAACTGGTCCTCGT
ACGCGACCAGGCCGAGCGGGACCAGCTCACCGAGTCGGTGGCGGAGCGGCGGGTCGACGGAGTACTCCTGGTCTCGGTGC
ACGAGCACGATCCGCTGCCCGGTCTGCTGGAGGACATGGGTCTGCCCACGGTGCTCGCCGGGCGCCGTTCCCCCGCCGAG
TCGCTCAGCCACGTGCACTCCGACAACGCGGGCGGAGCCTCTGCGGCCGTCAGGCACCTCCTCCTTCGCGGGCGGCGGAC
CATCGCCACGATCAGCGGCCCCCTCGACATGGACGTGGCGCGCAGCCGGCTCCAGGGGTGGCGCGAGGCCCTTGAGAAGG
CGGGCCACGAAGCCACGGAGCACCTCGTGGTCTCGGCAGACTTCACCGAGGAGGGCGGCGAGGCAGCGATGCGTTCACTC
CTTGAACAACTTCCCACGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCGGCAGGGGCGCTGGCGGAGTTGCGCAG
GCAGGGGCGCAGCGTCCCCGGCGATGTGGCGGTGGTCGGATTCGACGACTCCATCATCGCCCGGCACAGCAACCCGCCCC
TCACCAGCGTGCGTCAGCCCATCGAGGAGATCGGCAACACGATCGCCCGCATCCTCCTGGAAGAGATCAGCAATCCCGAA
GAACCGCGTCAGCACGTCGTTCTTCCTACCGAACTCGTGGTACGCGAATCGTCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.364
  cytR Vibrio parahaemolyticus RIMD 2210633

35.86

100

0.364