Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG718_RS05070 Genome accession   NZ_CP108081
Coordinates   1065610..1066281 (-) Length   223 a.a.
NCBI ID   WP_143644668.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060610..1071281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS05060 (OG718_05055) - 1060780..1061316 (+) 537 WP_143644670.1 TetR/AcrR family transcriptional regulator -
  OG718_RS05065 (OG718_05060) - 1062608..1065085 (-) 2478 WP_328843390.1 WD40 repeat domain-containing protein -
  OG718_RS05070 (OG718_05065) dinR/lexA 1065610..1066281 (-) 672 WP_143644668.1 transcriptional repressor LexA Regulator
  OG718_RS05075 (OG718_05070) - 1067039..1067932 (+) 894 WP_328843391.1 MarR family transcriptional regulator -
  OG718_RS05080 (OG718_05075) - 1068031..1069128 (+) 1098 WP_328843392.1 cupin domain-containing protein -
  OG718_RS05085 (OG718_05080) - 1069151..1070056 (+) 906 WP_143644665.1 fumarylacetoacetate hydrolase family protein -
  OG718_RS05090 (OG718_05085) - 1070082..1071263 (+) 1182 WP_328843393.1 FAD-dependent monooxygenase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24445.99 Da        Isoelectric Point: 6.0184

>NTDB_id=652953 OG718_RS05070 WP_143644668.1 1065610..1066281(-) (dinR/lexA) [Streptomyces sp. NBC_00258]
MDNNAPTRRGRPPGPQTAERELTDRQAAIVRYITQTVARQGYPPSMREIGQAVKLASTSSVAHQLMALERKGVLYRDPHR
PRAYCVRPSWAPDLGHKSEPAVDVPLVGRIAAGAPLLAEEMVEDVYALPRQLVGDGELFALTVVGDSMIEMAICDGDIVI
VRRMDSADHGDVVAALLEDEATVKQLRRQDGQVWLMPHNSAYEPIPGDQAQILGKVVSVLRQL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=652953 OG718_RS05070 WP_143644668.1 1065610..1066281(-) (dinR/lexA) [Streptomyces sp. NBC_00258]
ATGGACAACAACGCGCCGACACGCCGAGGTCGGCCCCCAGGCCCCCAGACCGCGGAAAGAGAGCTGACGGACCGGCAAGC
GGCTATCGTCCGCTACATCACGCAGACGGTCGCCCGGCAGGGCTACCCGCCGTCGATGCGGGAAATCGGCCAGGCCGTGA
AGCTCGCCAGTACGTCCTCGGTCGCCCACCAACTGATGGCCCTGGAACGCAAAGGCGTCCTGTACCGCGACCCGCACCGT
CCCCGCGCCTACTGCGTACGCCCCTCCTGGGCACCTGACCTGGGACACAAGTCCGAGCCTGCGGTGGATGTGCCGCTCGT
CGGACGGATCGCCGCCGGCGCACCGCTGCTCGCCGAGGAAATGGTCGAGGACGTCTACGCACTGCCGCGACAACTCGTCG
GCGACGGCGAGCTGTTCGCCCTGACCGTGGTCGGCGACAGCATGATCGAGATGGCGATCTGCGACGGCGACATCGTCATC
GTCCGCCGTATGGACAGCGCCGACCACGGCGATGTCGTCGCCGCGCTCCTCGAAGACGAAGCCACGGTCAAACAGCTGCG
CCGACAGGACGGCCAGGTGTGGCTCATGCCCCACAACTCCGCGTACGAGCCGATCCCCGGCGACCAGGCCCAGATCCTCG
GCAAAGTCGTCAGTGTTCTGCGCCAACTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(20-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

41.951

91.928

0.386