Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG718_RS02125 Genome accession   NZ_CP108081
Coordinates   486167..486838 (-) Length   223 a.a.
NCBI ID   WP_328842987.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00258     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 481167..491838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG718_RS02105 (OG718_02120) - 482750..484087 (-) 1338 WP_328842983.1 site-specific integrase -
  OG718_RS02110 (OG718_02125) - 484299..484967 (+) 669 WP_328842984.1 ATP-dependent DNA ligase -
  OG718_RS02115 (OG718_02130) - 485156..485371 (-) 216 WP_328842985.1 hypothetical protein -
  OG718_RS02120 (OG718_02135) - 485349..485846 (-) 498 WP_328842986.1 hypothetical protein -
  OG718_RS02125 (OG718_02140) dinR/lexA 486167..486838 (-) 672 WP_328842987.1 transcriptional repressor LexA Regulator
  OG718_RS02130 (OG718_02145) - 487062..488882 (+) 1821 WP_328842988.1 pentapeptide repeat-containing protein -
  OG718_RS02135 (OG718_02150) - 489316..489450 (-) 135 WP_328842989.1 hypothetical protein -
  OG718_RS02140 (OG718_02155) - 489614..490900 (+) 1287 WP_328842990.1 hypothetical protein -
  OG718_RS02145 (OG718_02160) - 491048..491791 (-) 744 WP_328842991.1 NUDIX domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24356.01 Da        Isoelectric Point: 6.8688

>NTDB_id=652951 OG718_RS02125 WP_328842987.1 486167..486838(-) (dinR/lexA) [Streptomyces sp. NBC_00258]
MENTAHARRGRPPGTRAAEGELTSRQAAIVRCITETVDRQGYPPSMREIGQAVKLASTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGSRSEAPVDVPLVGRIAAGAPLLAEEMVEDVYSLPRQLVGEGEMFALTVVGDSMIDAAICDGDIVI
VRRMDSADHGDIVAALLEDEATVKFLRRQDGQVWLMPRNPAYKPIPGDQAQILGKVVGVLRML

Nucleotide


Download         Length: 672 bp        

>NTDB_id=652951 OG718_RS02125 WP_328842987.1 486167..486838(-) (dinR/lexA) [Streptomyces sp. NBC_00258]
ATGGAGAACACCGCGCACGCCCGCCGAGGCCGCCCTCCGGGCACCCGGGCCGCTGAGGGGGAGCTGACGAGCCGCCAGGC
GGCCATCGTCCGCTGCATCACGGAGACGGTCGACCGGCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTGA
AACTCGCCAGTACGTCCTCGGTCGCCCATCAGCTGATGGCCCTTGAGCGTAAAGGCGTCCTCTACCGCGACCCGCACCGA
CCCCGCGCCTACCGGGTCCGCCCCTCATGGGCACCCGACCTGGGATCCAGGAGCGAGGCACCGGTCGACGTACCGCTCGT
CGGGCGAATCGCCGCCGGCGCGCCCCTACTCGCCGAGGAAATGGTCGAGGACGTCTACTCCTTGCCCCGCCAACTTGTCG
GCGAAGGGGAAATGTTCGCCCTGACCGTGGTCGGCGACAGCATGATCGACGCGGCGATTTGCGATGGCGACATCGTGATT
GTCCGCCGCATGGACAGCGCCGACCACGGCGATATCGTTGCCGCGCTCTTGGAGGACGAGGCCACCGTCAAGTTCCTGCG
TCGGCAGGACGGCCAGGTGTGGCTCATGCCCCGCAACCCGGCCTACAAGCCGATCCCCGGTGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCATGCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(105-217)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.019

93.722

0.413