Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG766_RS25650 Genome accession   NZ_CP108080
Coordinates   5639799..5641022 (+) Length   407 a.a.
NCBI ID   WP_266383808.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00259     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5634799..5646022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS25635 (OG766_25625) - 5635628..5637055 (+) 1428 WP_266383800.1 sugar porter family MFS transporter -
  OG766_RS25640 (OG766_25630) - 5637105..5638076 (-) 972 WP_328726281.1 LLM class flavin-dependent oxidoreductase -
  OG766_RS25645 (OG766_25635) - 5638137..5639612 (-) 1476 WP_328726282.1 cytosine permease -
  OG766_RS25650 (OG766_25640) pilA 5639799..5641022 (+) 1224 WP_266383808.1 signal recognition particle-docking protein FtsY Machinery gene
  OG766_RS25655 (OG766_25645) - 5641168..5641830 (-) 663 WP_266383811.1 bifunctional DNA primase/polymerase -
  OG766_RS25660 (OG766_25650) - 5642320..5643795 (+) 1476 WP_328726283.1 hypothetical protein -
  OG766_RS25665 (OG766_25655) - 5644179..5645534 (+) 1356 WP_266383815.1 ammonium transporter -
  OG766_RS25670 (OG766_25660) - 5645531..5645869 (+) 339 WP_266383816.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42899.94 Da        Isoelectric Point: 4.3807

>NTDB_id=652929 OG766_RS25650 WP_266383808.1 5639799..5641022(+) (pilA) [Streptomyces sp. NBC_00259]
MEIVILAVVIALVAIGAISGLVVSSRKKKQLPPSAPSSTPTITAPPAEPHVGEEAETPREEPRRTIEEVDLPTAEEAVET
PAAVEDPVVAEPEAPAIEIPEPTAGRLVRLRARLARSQNTLGKGLLTLLSREHLDDETWEEIEDTLLTADVGVAPTQELV
EHLRERVKVLGTRTPDELRNLLREELLALIGTDVDREVKTESGLDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAF
VDALIGD

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=652929 OG766_RS25650 WP_266383808.1 5639799..5641022(+) (pilA) [Streptomyces sp. NBC_00259]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGATCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCACCGTCGAGCACGCCGACCATCACCGCTCCGCCCGCCGAGCCGCATGTCGGCGAGG
AGGCGGAGACACCGCGGGAAGAACCACGCCGCACCATCGAGGAGGTCGACCTCCCGACGGCGGAGGAGGCCGTCGAGACC
CCGGCCGCCGTCGAGGACCCGGTCGTCGCCGAGCCCGAGGCTCCCGCGATCGAGATCCCGGAGCCGACCGCGGGCCGTCT
CGTACGGCTGCGTGCCCGCCTCGCCCGCTCGCAGAACACGCTGGGCAAGGGACTGCTGACCCTGCTCTCGCGCGAGCACC
TCGACGACGAGACGTGGGAGGAGATCGAGGACACGCTCCTCACCGCGGACGTCGGCGTCGCACCGACGCAGGAGCTCGTC
GAGCATCTGCGCGAGCGGGTGAAGGTGCTCGGCACGCGCACGCCGGACGAGCTGCGGAACCTGCTCCGCGAGGAGCTGCT
CGCCCTCATCGGCACGGACGTCGACCGCGAGGTGAAGACCGAGAGCGGCCTGGACACCCCGGGCGTCGTGATGGTCGTCG
GTGTCAACGGCACCGGCAAGACGACGACCACGGGCAAGCTGGCGCGGGTGCTCGTCGCGGACGGGCGCAGCGTCGTCCTG
GGCGCGGCGGACACGTTCCGCGCGGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAACGGGTCGGCGCGCGTACGGTGCG
CGGGCCCGAGGGCGGAGACCCGGCGTCGATCGCCTTCGACGCCGTCAAGGAGGGCATCGCGGAGGGCGCGGACGTCGTGC
TCATCGACACCGCGGGGCGGCTGCACACCAAGACCGGCCTCATGGACGAGCTGGGCAAGGTCAAGCGAGTCGTCGAGAAG
CACGGCCCGCTGGACGAGGTCCTGCTCGTCCTCGATGCCACGACCGGTCAGAACGGCCTGGTGCAGGCCCGTGTCTTCGC
CGAGGTCGTGGACATCACCGGCATCGTCCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTGATCGCCGTCCAGC
GTGAACTCGGCGTTCCCGTCAAGCTCGTCGGCCTCGGTGAGGGCCCGGACGACCTGGCCCCGTTCGAGCCGGAGGCATTC
GTCGACGCGCTGATCGGCGACTAG

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(208-405)

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.952

100

0.405