Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG766_RS20150 Genome accession   NZ_CP108080
Coordinates   4446940..4448349 (-) Length   469 a.a.
NCBI ID   WP_266381224.1    Uniprot ID   A0ACC6QL04
Organism   Streptomyces sp. NBC_00259     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4441940..4453349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG766_RS20130 (OG766_20130) - 4442384..4442962 (-) 579 WP_328725914.1 SigE family RNA polymerase sigma factor -
  OG766_RS20135 (OG766_20135) - 4443130..4444080 (-) 951 WP_266381221.1 A/G-specific adenine glycosylase -
  OG766_RS20140 (OG766_20140) - 4444690..4445508 (+) 819 WP_266381222.1 hypothetical protein -
  OG766_RS20145 (OG766_20145) disA 4445693..4446826 (-) 1134 WP_266381223.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG766_RS20150 (OG766_20150) radA/sms 4446940..4448349 (-) 1410 WP_266381224.1 DNA repair protein RadA Machinery gene
  OG766_RS20155 (OG766_20155) - 4448574..4450388 (+) 1815 WP_328725915.1 hypothetical protein -
  OG766_RS20160 (OG766_20160) - 4450485..4451360 (-) 876 WP_328725916.1 hypothetical protein -
  OG766_RS20165 (OG766_20165) - 4451401..4452333 (+) 933 WP_266381227.1 Ppx/GppA phosphatase family protein -
  OG766_RS20170 (OG766_20170) - 4452357..4453271 (+) 915 WP_266381228.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49464.59 Da        Isoelectric Point: 8.2605

>NTDB_id=652914 OG766_RS20150 WP_266381224.1 4446940..4448349(-) (radA/sms) [Streptomyces sp. NBC_00259]
MAARTKTAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGAPAVRTTAVGRVTNAALPIGQVDGRQATARTTGVAEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDDHRTLYVTGEESASQVRLRADRISALNDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLHF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLTDPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPSDPGKVPPGMKVTEVADIGDALRVLPRGRRAEAPRGEEVRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=652914 OG766_RS20150 WP_266381224.1 4446940..4448349(-) (radA/sms) [Streptomyces sp. NBC_00259]
ATGGCTGCCCGTACGAAAACCGCCAAGGACAGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGCACGGTCGAGGAGTACGGGGCGCCCGCCGTCCGTACGACCGCCGTCGGTC
GCGTCACCAACGCCGCGCTGCCCATCGGCCAGGTCGACGGCCGGCAGGCCACCGCGCGTACGACCGGCGTCGCCGAGCTG
GACCGGGTGCTCGGGGGTGGGCTGGTGCCGGGCGCGGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCT
GCTGCTGGACGTGGCGGCGAAGGCGGCGAGCGACGACCACCGCACGCTGTACGTCACGGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGGATCAGCGCGCTGAACGACCATCTGTATCTCGCCGCCGAGACCGATCTGTCGGCGGTCCTC
GGCCACCTCGACGCGGTCAAGCCCTCACTGCTGGTCCTGGACTCCGTCCAGACCGTGGCCTCCCCGGAGATCGACGGGGC
GCCCGGCGGGATGGCCCAGGTCCGGGAGGTCGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTGC
TGGTGGGCCACGTCACCAAGGACGGCGCGATCGCGGGTCCGCGGCTGCTGGAGCATCTCGTCGATGTCGTGCTGCACTTC
GAGGGCGACCGGCATGCCCGGCTGCGGCTCGTGCGGGGCGTCAAGAACCGGTACGGAGCGACGGACGAGGTCGGCTGTTT
CGAGCTGCACGACGAGGGCATCACCGGGCTCACCGACCCCAGCGGCCTGTTCCTCACCCGGCGTGCCGAGCCCGTCCCGG
GCACCTGCCTGACGGTGACGCTGGAGGGCCGCCGTCCGCTGGTCGCCGAGGTGCAGGCGCTGACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACGACCTCGGGCCTGGAGACCTCCCGGGTGTCGATGATGCTGGCCGTGCTGGAGCAGCGGGGCCG
GATCAGCGCCCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGGGTGAAGCTCTCCGAGCCCGCGGCGGACCTCG
CGATCGCGCTCGCGCTGGCGTCCGCCGCCAGTGACACCCCGCTCCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGCCTC
GCGGGCGAGGTGAGACGGGTCACGGGCGTTCAGCGCCGGCTGTCCGAGGCGCACCGTCTGGGCTTCACGCACGCCCTGGT
CCCGTCCGATCCGGGCAAGGTCCCGCCTGGTATGAAGGTCACGGAAGTCGCCGACATCGGGGACGCATTGCGGGTGCTCC
CACGGGGGCGCAGGGCAGAGGCCCCACGGGGTGAGGAAGTCCGCCGCTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.588

0.424
  radA Streptococcus mitis SK321

42.572

96.162

0.409
  radA Streptococcus mitis NCTC 12261

42.572

96.162

0.409
  radA Streptococcus pneumoniae Rx1

42.129

96.162

0.405
  radA Streptococcus pneumoniae D39

42.129

96.162

0.405
  radA Streptococcus pneumoniae R6

42.129

96.162

0.405
  radA Streptococcus pneumoniae TIGR4

42.129

96.162

0.405