Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS36185 Genome accession   NZ_CP108076
Coordinates   8132915..8133562 (-) Length   215 a.a.
NCBI ID   WP_328483529.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8127915..8138562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS36160 (OG860_36180) - 8128074..8128358 (-) 285 WP_328483524.1 DUF6332 family protein -
  OG860_RS36165 (OG860_36185) - 8128619..8130109 (-) 1491 WP_328483525.1 MFS transporter -
  OG860_RS36170 (OG860_36190) - 8130196..8130603 (+) 408 WP_328483526.1 MarR family transcriptional regulator -
  OG860_RS36175 (OG860_36195) - 8130617..8131363 (-) 747 WP_328483527.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  OG860_RS36180 (OG860_36200) - 8131413..8132651 (-) 1239 WP_328483528.1 MFS transporter -
  OG860_RS36185 (OG860_36205) vraR 8132915..8133562 (-) 648 WP_328483529.1 response regulator transcription factor Regulator
  OG860_RS36190 (OG860_36210) - 8133559..8134032 (-) 474 Protein_7144 hypothetical protein -
  OG860_RS36195 (OG860_36215) - 8134064..8134717 (+) 654 WP_328483530.1 hypothetical protein -
  OG860_RS36200 (OG860_36220) htpG 8134903..8136843 (+) 1941 WP_328483531.1 molecular chaperone HtpG -
  OG860_RS36205 (OG860_36225) - 8137200..8138339 (-) 1140 WP_328484761.1 methyltransferase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22764.31 Da        Isoelectric Point: 9.0611

>NTDB_id=652865 OG860_RS36185 WP_328483529.1 8132915..8133562(-) (vraR) [Streptomyces sp. NBC_00267]
MNTSVPPPPVRLLLCDDHAVVRAGLRALLSSADGIEVVGEAGTGEEALALAARLRPDVVLMDLQLDGGMDGVTAIRRLTS
GPDAGPRVLVLTMFDTDADITRAIEAGATGYLLKAERPDELFTAVRSAAAGRTALSAPVADRLLTRMRSPRPALSTRERE
ILAQLAQGLGNREIARALFISEATVKTHLGRIYGKLGVETRSGAVAVAKERRLLP

Nucleotide


Download         Length: 648 bp        

>NTDB_id=652865 OG860_RS36185 WP_328483529.1 8132915..8133562(-) (vraR) [Streptomyces sp. NBC_00267]
GTGAACACGTCCGTGCCCCCGCCGCCCGTCCGGCTGCTGCTGTGCGACGACCACGCCGTCGTCCGGGCGGGACTGCGCGC
CCTGCTGTCCAGCGCCGACGGCATCGAGGTGGTCGGCGAGGCGGGCACCGGTGAGGAGGCACTCGCCCTGGCCGCCCGGC
TGCGTCCCGACGTGGTGCTGATGGACCTTCAGCTCGACGGCGGCATGGACGGCGTGACGGCCATCCGGCGTCTGACGAGC
GGCCCGGACGCGGGTCCCCGGGTCCTGGTGCTCACCATGTTCGACACCGACGCCGACATCACCCGCGCCATCGAGGCGGG
CGCCACTGGCTACCTGCTCAAGGCCGAGCGGCCGGACGAACTCTTCACCGCCGTCCGCAGCGCGGCGGCCGGCCGCACCG
CGCTGTCGGCTCCGGTCGCCGACCGCCTGCTCACCAGGATGCGCAGTCCGCGCCCAGCGCTGTCCACCCGTGAGCGGGAG
ATCCTCGCCCAGCTCGCCCAGGGCCTGGGCAACCGGGAGATCGCCCGGGCGCTGTTCATCAGCGAGGCGACGGTCAAGAC
CCATCTCGGACGGATCTACGGCAAATTGGGGGTGGAGACCCGGTCGGGCGCGGTGGCGGTCGCCAAGGAGAGACGACTGC
TGCCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(13-126)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.571

97.674

0.377