Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG860_RS23735 Genome accession   NZ_CP108076
Coordinates   5277201..5278199 (+) Length   332 a.a.
NCBI ID   WP_328481354.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5272201..5283199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS23710 (OG860_23705) - 5272362..5273012 (+) 651 WP_328481349.1 TetR/AcrR family transcriptional regulator -
  OG860_RS23715 (OG860_23710) - 5273241..5274776 (+) 1536 WP_328481350.1 MFS transporter -
  OG860_RS23720 (OG860_23715) - 5274849..5275358 (-) 510 WP_328481351.1 MarR family transcriptional regulator -
  OG860_RS23725 (OG860_23720) - 5275639..5276448 (+) 810 WP_328481352.1 class III extradiol ring-cleavage dioxygenase -
  OG860_RS23730 (OG860_23725) - 5276481..5277023 (-) 543 WP_328481353.1 N-acetyltransferase family protein -
  OG860_RS23735 (OG860_23730) rpoS 5277201..5278199 (+) 999 WP_328481354.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG860_RS23740 (OG860_23735) - 5279077..5279835 (+) 759 WP_328484616.1 TetR family transcriptional regulator -
  OG860_RS23745 (OG860_23740) - 5279873..5280931 (-) 1059 WP_328481355.1 YafY family protein -
  OG860_RS23750 (OG860_23745) - 5280994..5282562 (+) 1569 WP_328481356.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37144.82 Da        Isoelectric Point: 4.9671

>NTDB_id=652841 OG860_RS23735 WP_328481354.1 5277201..5278199(+) (rpoS) [Streptomyces sp. NBC_00267]
MATRAVARRKSASGETTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESRAD
ASRDELEALVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPARVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDGLIDRLDPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=652841 OG860_RS23735 WP_328481354.1 5277201..5278199(+) (rpoS) [Streptomyces sp. NBC_00267]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCTCTGGCGAGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGCACGCCTCTGCTCGACGCCGCCAAGG
AAGTCGAGTTGTCACAGATCATCGAGGCGGGTGTGTTCGCGCAGCAGGTCCTCGACGGCGACGAGGAGTCCAGGGCGGAC
GCCTCTCGTGACGAACTCGAGGCCCTGGTCGCCGAGAGTGAGCGGGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCGGTGGCCCGCCGCTACCCCCGCAGCGGTCTGCCCCTTCTCGACCTGATCCAGGAGGGCAACGCCGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCGGACCAGTCGCGCACGATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGCCGCGT
GCAGCGTGAGTTCAACCGGGAGAACGGCCGCGACCCCGAGCCCGCCGAGATCGCGACCGAGCTCGGGTCGACGCCGGCGC
GTGTCACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCCGTCGACGACCAGGGCGAGACCCAGTTC
GGCGACCTGCTGGAGGACACCTCCGCGGTCTCGCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTGGACGG
CCTCATCGACCGCCTCGACCCGCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACTC
TGACCGAGGTCGGCAAGGAGCACGGCCTGACGCGGGAGCGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAAGCGGCGGCGTAG

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361