Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG860_RS14965 Genome accession   NZ_CP108076
Coordinates   3347234..3347851 (-) Length   205 a.a.
NCBI ID   WP_328479869.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3342234..3352851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS14940 (OG860_14930) - 3342747..3342875 (+) 129 WP_328479866.1 hypothetical protein -
  OG860_RS14945 (OG860_14935) - 3343058..3344155 (-) 1098 WP_328479867.1 bifunctional succinyldiaminopimelate transaminase/glutamate-prephenate aminotransferase -
  OG860_RS14950 (OG860_14940) fdxA 3344275..3344595 (-) 321 WP_030669097.1 ferredoxin -
  OG860_RS14955 (OG860_14945) - 3344736..3345761 (+) 1026 Protein_2972 GNAT family N-acetyltransferase -
  OG860_RS14960 (OG860_14950) - 3346076..3346918 (+) 843 WP_328479868.1 transglutaminase-like domain-containing protein -
  OG860_RS14965 (OG860_14955) vraR 3347234..3347851 (-) 618 WP_328479869.1 response regulator transcription factor Regulator
  OG860_RS14970 (OG860_14960) - 3347848..3349047 (-) 1200 WP_328484520.1 histidine kinase -
  OG860_RS14975 (OG860_14965) - 3349053..3349793 (-) 741 WP_328479870.1 ABC transporter permease -
  OG860_RS14980 (OG860_14970) - 3349790..3350725 (-) 936 WP_328479871.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21484.63 Da        Isoelectric Point: 5.1080

>NTDB_id=652819 OG860_RS14965 WP_328479869.1 3347234..3347851(-) (vraR) [Streptomyces sp. NBC_00267]
MSGGTIKVLLAEDQSMVREALAALLGLEDDIEVVAQVARGDEVLAAAHAHDVDVALLDIEMPGATGIEAAAQLHKELPRL
KLVVLTTFGRPGYLRSAMEAGADAFLVKDAPAAQLAEAVRKVLAGERVIDPTLAAAALAGGANPLTDREREILRAAADGS
TNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKGWL

Nucleotide


Download         Length: 618 bp        

>NTDB_id=652819 OG860_RS14965 WP_328479869.1 3347234..3347851(-) (vraR) [Streptomyces sp. NBC_00267]
ATGAGTGGTGGCACGATCAAGGTCCTGCTGGCCGAGGACCAGTCGATGGTCCGCGAGGCCCTGGCGGCCCTGCTCGGCCT
GGAGGACGACATCGAGGTGGTTGCCCAGGTGGCGCGCGGCGACGAGGTCCTCGCGGCCGCCCACGCCCACGACGTCGACG
TGGCCCTCCTCGACATCGAGATGCCGGGCGCGACGGGCATCGAGGCCGCGGCGCAACTCCACAAGGAGCTCCCGCGGTTG
AAGCTGGTCGTCCTCACCACCTTCGGCCGCCCCGGCTATCTGCGCAGCGCCATGGAGGCCGGCGCCGACGCCTTCCTCGT
CAAGGACGCCCCCGCGGCCCAACTCGCGGAGGCGGTCCGCAAGGTGCTGGCGGGCGAGCGGGTCATCGACCCCACGCTCG
CGGCTGCCGCCCTGGCCGGCGGCGCCAACCCCCTCACCGACCGTGAACGGGAGATCCTGCGCGCGGCGGCCGACGGCTCG
ACCAACGCGGAACTCGCGGCGGCCCTGCACCTGTCCCAGGGCACGGTCCGCAACTACCTCTCGACGGCGATACAGAAACT
GGCCGTACGCAACAGGGCTGAGGCGGTGCGGACCGCGAGGGAGAAGGGCTGGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(144-199)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.715

100

0.371