Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG860_RS11745 Genome accession   NZ_CP108076
Coordinates   2610348..2611127 (+) Length   259 a.a.
NCBI ID   WP_328479334.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00267     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2605348..2616127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG860_RS11730 (OG860_11725) - 2605468..2606001 (+) 534 WP_328479331.1 TerD family protein -
  OG860_RS11735 (OG860_11730) - 2606131..2609031 (-) 2901 WP_328479332.1 vitamin B12-dependent ribonucleotide reductase -
  OG860_RS11740 (OG860_11735) nrdR 2609196..2609765 (-) 570 WP_328479333.1 transcriptional regulator NrdR -
  OG860_RS11745 (OG860_11740) dinR/lexA 2610348..2611127 (+) 780 WP_328479334.1 transcriptional repressor LexA Regulator
  OG860_RS11750 (OG860_11745) - 2611284..2613260 (-) 1977 WP_328479335.1 ATP-dependent DNA helicase -
  OG860_RS11755 (OG860_11750) - 2613427..2614047 (-) 621 WP_328479336.1 GNAT family N-acetyltransferase -
  OG860_RS11760 (OG860_11755) - 2614125..2615966 (-) 1842 WP_328484476.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28063.86 Da        Isoelectric Point: 7.0668

>NTDB_id=652807 OG860_RS11745 WP_328479334.1 2610348..2611127(+) (dinR/lexA) [Streptomyces sp. NBC_00267]
MTTTADSATITAQDRSQGRLEPVHAMNEAMNPEAHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=652807 OG860_RS11745 WP_328479334.1 2610348..2611127(+) (dinR/lexA) [Streptomyces sp. NBC_00267]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCATGAATCCCGAGGCACACAAGCGCTCCTTGCCTGGCCGACCGCCAGGCATCCGCGCCGACAGCTCGGGACTCA
CCGACCGGCAGCGCCGAGTGATCGAGGTCATCAGGGACTCCGTACAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGTCAGGCGGTCGGCCTGTCGAGCACGTCCTCGGTCGCCCACCAGCTGATGGCCCTTGAGCGCAAGGGCTTCCTGCGCCG
CGACCCCCATCGGCCGCGCGCCTACGAGGTGCGCGGCTCCGACCAGGCTGCCTCCGTGCAGCCCACGGACACCGCCGGGA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGCATCGCCGCCGGTGGCCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTCTTCCCTCTGCCCAGGCAGTTGGTGGGTGACGGTGAGCTGTTCGTGCTCAAGGTCGTCGGTGACTCGATGATCGAAGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTGGCGGCGATGCTGG
AGGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGGCATGTGTGGCTCCTCCCGCACAACGCGGCGTACGAGCCG
ATCCCGGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTCCGCCGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375