Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OHA28_RS25205 Genome accession   NZ_CP108075
Coordinates   5538633..5539757 (-) Length   374 a.a.
NCBI ID   WP_326712089.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00269     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5533633..5544757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS25195 (OHA28_25240) gyrB 5535725..5537797 (-) 2073 WP_326712087.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  OHA28_RS25200 (OHA28_25245) - 5538094..5538636 (-) 543 WP_326712088.1 DciA family protein -
  OHA28_RS25205 (OHA28_25250) recF 5538633..5539757 (-) 1125 WP_326712089.1 DNA replication/repair protein RecF Machinery gene
  OHA28_RS25210 (OHA28_25255) gnd 5539862..5540737 (-) 876 WP_326712090.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OHA28_RS25215 (OHA28_25260) dnaN 5540915..5542045 (-) 1131 WP_116512073.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40957.63 Da        Isoelectric Point: 6.9324

>NTDB_id=652748 OHA28_RS25205 WP_326712089.1 5538633..5539757(-) (recF) [Streptomyces sp. NBC_00269]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGAERAVIRAAVRQGERQ
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLALVKGDPGERRRFLDELITSRSPRMAGVRSDYDRVLKQ
RNTLLKSAALARRHGGRSMDLSTLDVWDQHLARVGAELLAQRFNLIATLQPLADKAYEQLAPGGGPLALEYKPSSPEIDG
HAREELYEQLMAALEAARKQEIERGVTLVGPHRDDLVLKLGQLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVLVL
DDVFAELDARRRERLAELVAPGEQVLVTAAVDDDVPGVLAGTRYAVSEGTVERV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=652748 OHA28_RS25205 WP_326712089.1 5538633..5539757(-) (recF) [Streptomyces sp. NBC_00269]
ATGCACGTGACGCATCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCTCTCGATCCGGGCGTCACCGC
GTTCGTGGGCCCGAACGGGCAGGGCAAGACCAACCTTGTCGAGGCCGTCGGCTATCTCGCCACCCTCGGCAGCCACCGGG
TCTCCTCGGACGCGCCGCTGGTCCGCATGGGCGCCGAGCGCGCCGTCATCCGGGCGGCGGTCCGGCAGGGCGAGCGACAG
CAGCTCATCGAGCTCGAACTCAACCCGGGCAAGGCGAACCGCGCCAGGATCAACCGGTCCTCGCAGGTCAGACCCCGTGA
TGTGCTCGGCATAGTGCGCACGGTCCTGTTCGCGCCGGAGGACCTCGCCCTCGTCAAGGGCGACCCCGGCGAGCGCCGCC
GCTTCCTGGACGAGCTGATCACCTCCCGCTCCCCGCGCATGGCCGGTGTCCGGTCCGACTACGACCGCGTGCTCAAGCAG
CGCAACACGCTCCTCAAGTCGGCCGCGCTCGCCCGCAGGCACGGCGGTCGGTCCATGGACCTGTCGACCCTCGACGTGTG
GGACCAGCACCTCGCGCGGGTGGGCGCCGAGCTGCTCGCGCAGCGGTTCAACCTGATCGCCACGCTCCAGCCGCTCGCCG
ACAAGGCGTACGAACAGCTGGCGCCCGGCGGCGGGCCGCTGGCCCTGGAATACAAGCCCTCCTCGCCCGAAATCGACGGC
CACGCGCGCGAAGAGCTCTACGAGCAGCTGATGGCCGCCCTCGAAGCGGCCCGCAAACAGGAGATCGAGCGGGGCGTGAC
CCTCGTCGGACCGCACCGCGACGACCTGGTTCTCAAGCTCGGCCAGCTGCCGGCGAAGGGGTACGCCAGCCATGGCGAGT
CCTGGTCGTACGCGCTGGCGCTGCGCCTGGCCTCGTACGATCTGCTGCGGGCCGAGGGGAACGAGCCGGTGCTCGTGCTC
GACGACGTCTTCGCGGAGCTCGACGCGCGGCGCAGGGAGCGTCTCGCCGAGCTGGTCGCCCCCGGTGAGCAGGTCCTGGT
GACCGCCGCGGTGGACGACGACGTGCCGGGCGTCCTGGCGGGCACGCGGTACGCGGTGTCCGAAGGCACGGTGGAGCGGG
TATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

95.187

0.361