Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHA28_RS16635 Genome accession   NZ_CP108075
Coordinates   3625111..3625896 (+) Length   261 a.a.
NCBI ID   WP_326710773.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00269     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3620111..3630896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA28_RS16620 (OHA28_16650) - 3620407..3620934 (+) 528 WP_326710771.1 TerD family protein -
  OHA28_RS16625 (OHA28_16655) - 3621012..3623912 (-) 2901 WP_326710772.1 vitamin B12-dependent ribonucleotide reductase -
  OHA28_RS16630 (OHA28_16660) nrdR 3624049..3624594 (-) 546 WP_116509015.1 transcriptional regulator NrdR -
  OHA28_RS16635 (OHA28_16665) dinR/lexA 3625111..3625896 (+) 786 WP_326710773.1 transcriptional repressor LexA Regulator
  OHA28_RS16640 (OHA28_16670) - 3626041..3628023 (-) 1983 WP_326710774.1 ATP-dependent DNA helicase -
  OHA28_RS16645 (OHA28_16675) - 3628064..3629977 (-) 1914 WP_326715943.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28181.99 Da        Isoelectric Point: 7.4237

>NTDB_id=652717 OHA28_RS16635 WP_326710773.1 3625111..3625896(+) (dinR/lexA) [Streptomyces sp. NBC_00269]
MTTTADSATITAQDRSQGRLEPVHAMNDVSMSAEGPKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=652717 OHA28_RS16635 WP_326710773.1 3625111..3625896(+) (dinR/lexA) [Streptomyces sp. NBC_00269]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCCATGAA
TGACGTATCCATGAGCGCGGAGGGGCCAAAGCCCGCGCGCTCCCTGCCGGGCCGACCTCCCGGAATCCGGGCGGACAGCT
CGGGGCTCACGGACAGGCAGCGCCGCGTCATCGAGGTGATCAGGGACTCCGTGCAGCGGCGTGGTTACCCGCCGTCGATG
CGGGAGATCGGCCAGGCGGTAGGCCTGTCGAGCACGTCGTCGGTCGCGCACCAGCTGATGGCCCTCGAGCGCAAGGGCTT
CCTGCGCCGGGACCCGCACCGCCCCCGCGCCTACGAGGTCCGTGGCTCCGACCAGCCGAGCGCGCAGCCCACGGACACCG
CAGGCAAGCCGGCCGCGTCGTACGTCCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCGGAAGAGTCCGTC
GAGGACGTGTTCCCCCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTCCGCCGCCAGCCTGTCGCGGAGAACGGCGACATCGTCGCCGCGA
TGCTCGAGGGCGAGGCCACCGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTGCCGCACAACTCCGCGTAC
CAGCCGATCCCCGGTGACGAGGCGACGATCCTCGGCAAGGTGGTGGCCGTTCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

81.226

0.375