Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS37880 Genome accession   NZ_CP108070
Coordinates   8361719..8362402 (+) Length   227 a.a.
NCBI ID   WP_097224585.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8356719..8367402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS37860 (OG798_37935) - 8356852..8357082 (-) 231 WP_075030622.1 hypothetical protein -
  OG798_RS37865 (OG798_37940) - 8357524..8359647 (+) 2124 WP_095852209.1 DNA topoisomerase IV subunit B -
  OG798_RS37870 (OG798_37945) - 8360050..8360574 (+) 525 WP_121414819.1 DUF1453 family protein -
  OG798_RS37875 (OG798_37950) - 8360571..8361722 (+) 1152 WP_328758407.1 histidine kinase -
  OG798_RS37880 (OG798_37955) vraR 8361719..8362402 (+) 684 WP_097224585.1 response regulator transcription factor Regulator
  OG798_RS37885 (OG798_37960) - 8362507..8362995 (+) 489 WP_257016552.1 DUF485 domain-containing protein -
  OG798_RS37890 (OG798_37965) - 8362992..8364584 (+) 1593 WP_121414817.1 cation acetate symporter -
  OG798_RS37895 (OG798_37970) - 8364708..8365400 (-) 693 WP_054229901.1 response regulator -
  OG798_RS37900 (OG798_37975) - 8365562..8366377 (+) 816 WP_054229902.1 ABC transporter ATP-binding protein -
  OG798_RS37905 (OG798_37980) - 8366367..8367242 (+) 876 WP_121414816.1 ABC transporter permease -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24190.74 Da        Isoelectric Point: 5.1690

>NTDB_id=652684 OG798_RS37880 WP_097224585.1 8361719..8362402(+) (vraR) [Streptomyces sp. NBC_00271]
MTEEETRKPARVVVADDQTVVREGIVMLLGLLPGIEVVGAAGDGHEAVALVAELAPDVVLMDLRMPRCDGVEATRRIRAE
HPGTQVVVLTTYADDESLFPALRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPAPAAVAPVEPPD
GLTTRETEVLLLIAEGLTNQEIARRLHVSPATVKTHINNLFAKTGLKDRAQAVRYAFGKGLVRPPTG

Nucleotide


Download         Length: 684 bp        

>NTDB_id=652684 OG798_RS37880 WP_097224585.1 8361719..8362402(+) (vraR) [Streptomyces sp. NBC_00271]
ATGACGGAGGAGGAGACCAGGAAGCCGGCTCGGGTCGTGGTGGCGGACGACCAGACCGTGGTGCGCGAAGGCATTGTGAT
GCTGCTGGGCCTGCTGCCGGGGATCGAGGTCGTGGGTGCGGCCGGGGACGGCCACGAGGCCGTGGCGCTGGTGGCCGAGC
TCGCCCCGGACGTCGTGCTGATGGACCTGCGCATGCCGCGCTGCGACGGCGTCGAGGCGACCCGGCGCATTCGCGCTGAG
CATCCGGGGACACAGGTCGTCGTGCTCACCACGTACGCGGACGACGAGTCGCTGTTCCCCGCGCTCAGAGCGGGAGCCCG
TGGCTATCTCACGAAGGACGCGGGTGGCGACGAGATCGTGCGCGCGGTGGAAAGCGTGCTGTCCGGTGACGCGGGACTCT
CGCCGAGCATCCAACGACGACTGCTGGAGCGGCTGTCGGAGCCGGCGCCCGCGGCCGTTGCGCCCGTGGAGCCGCCCGAT
GGGCTCACCACGCGGGAGACCGAGGTGCTGCTGCTCATCGCCGAGGGACTCACCAATCAGGAGATCGCCCGCAGGCTGCA
TGTCTCCCCCGCCACCGTGAAGACCCACATCAACAACCTCTTCGCCAAGACGGGCCTCAAGGATCGTGCTCAGGCAGTGC
GCTACGCCTTTGGGAAAGGTCTCGTACGGCCACCGACGGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-123)

Bacterial regulatory proteins, luxR family (GerE)

(161-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.906

93.833

0.374