Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG798_RS36700 Genome accession   NZ_CP108070
Coordinates   8062626..8063834 (+) Length   402 a.a.
NCBI ID   WP_121414913.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8057626..8068834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS36685 (OG798_36760) - 8059167..8060585 (+) 1419 WP_097224666.1 sugar porter family MFS transporter -
  OG798_RS36690 (OG798_36765) - 8060673..8061644 (-) 972 WP_097224665.1 LLM class flavin-dependent oxidoreductase -
  OG798_RS36695 (OG798_36770) - 8061690..8062437 (-) 748 Protein_7253 cytosine permease -
  OG798_RS36700 (OG798_36775) pilA 8062626..8063834 (+) 1209 WP_121414913.1 signal recognition particle-docking protein FtsY Machinery gene
  OG798_RS36705 (OG798_36780) - 8063940..8064602 (-) 663 WP_095852393.1 bifunctional DNA primase/polymerase -
  OG798_RS36710 (OG798_36785) - 8065061..8066536 (+) 1476 WP_095852392.1 hypothetical protein -
  OG798_RS36715 (OG798_36790) - 8066874..8068211 (+) 1338 WP_095852391.1 ammonium transporter -
  OG798_RS36720 (OG798_36795) - 8068208..8068546 (+) 339 WP_054235369.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42704.86 Da        Isoelectric Point: 4.4263

>NTDB_id=652678 OG798_RS36700 WP_121414913.1 8062626..8063834(+) (pilA) [Streptomyces sp. NBC_00271]
METVILAVVIAVVVIGALGGLLIGSRRKKSLPPAPPTTPDITAPPAEPHIGDEAEIPHDEERRTIEEVDLPDGSAAPVVV
EEPQPVVEVPAIEIPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVQPTQELVERLRE
RVKVLGTRTPDELRTLLREELLQLLVPEFDRTVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKHVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADAVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLD
EVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALI
GE

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=652678 OG798_RS36700 WP_121414913.1 8062626..8063834(+) (pilA) [Streptomyces sp. NBC_00271]
ATGGAAACCGTCATCCTTGCTGTAGTCATCGCCGTGGTCGTGATCGGCGCACTCGGCGGGCTCCTCATCGGCAGTCGCCG
CAAGAAGTCGCTGCCCCCGGCGCCCCCCACCACGCCCGACATCACCGCCCCTCCGGCCGAGCCGCACATCGGCGACGAGG
CCGAGATCCCGCACGACGAAGAGCGCCGGACGATAGAGGAGGTGGATCTCCCGGACGGCTCGGCCGCGCCGGTCGTCGTC
GAGGAACCCCAACCCGTTGTCGAAGTTCCCGCGATCGAGATCCCGGAGCCGACCGCCGGGCGCCTGGTGCGGCTGCGCGC
CCGCCTCTCGCGCTCGCAGAACGCGCTCGGCAAGGGGCTGCTCACGCTCCTCTCGCGCGAGCACCTCGACGAGGACACCT
GGGAGGAGATCGAGGACACGCTGCTGACCGCCGACGTCGGCGTGCAGCCCACCCAGGAGCTGGTCGAGCGGCTGCGTGAG
CGCGTGAAGGTGCTCGGTACGCGGACGCCCGACGAGCTGCGCACCCTGCTGCGCGAGGAGCTGCTGCAGCTTCTCGTCCC
CGAGTTCGACCGTACGGTCAAGACCGACTCGAACCTCGACACCCCGGGCATCGTGATGGTCGTCGGTGTCAACGGCACCG
GGAAGACCACCACCACCGGCAAGCTCGCCCGCGTCCTCGTCGCCGACGGCAAGCACGTGGTGCTCGGCGCCGCCGACACC
TTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGCGTGGGTGCCCGTACCGTGCGCGGCCCCGAGGGCGG
CGATCCCGCCTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGAGGAGGGTGCCGACGCAGTCCTCATCGACACGGCCG
GACGGCTGCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGTGTCGTCGAGAAGCACGCCCCGCTCGAC
GAGGTGCTGCTGGTCCTCGACGCCACGACCGGCCAGAACGGTCTGGTGCAGGCCCGCGTCTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCGAAGGGCGGCATCGTGATCGCGGTCCAGCGCGAGCTGGGGGTGC
CGGTCAAGCTGGTGGGTCTGGGCGAGGGCGCGGACGATCTGGCGCCGTTCGAGCCGGAGGCGTTCGTTGACGCCCTTATC
GGAGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-400)

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.407

86.816

0.368