Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L5465_RS12520 Genome accession   NZ_CP091596
Coordinates   2492982..2493800 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain Nord4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2487982..2498800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5465_RS12490 (L5465_12490) rpoZ 2488733..2489011 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L5465_RS12495 (L5465_12495) gmk 2489084..2489713 (-) 630 WP_000015937.1 guanylate kinase -
  L5465_RS12500 (L5465_12500) ispH 2489836..2490786 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L5465_RS12505 (L5465_12505) fimU 2490956..2491429 (+) 474 WP_001214065.1 pilus assembly FimT family protein Machinery gene
  L5465_RS12510 (L5465_12510) pilV 2491423..2491983 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L5465_RS12515 (L5465_12515) pilW 2491984..2492985 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  L5465_RS12520 (L5465_12520) pilX 2492982..2493800 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L5465_RS12525 (L5465_12525) pilY1 2493812..2497666 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  L5465_RS12530 (L5465_12530) pilY2 2497679..2498161 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  L5465_RS12535 (L5465_12535) pilE 2498158..2498583 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=652662 L5465_RS12520 WP_000149374.1 2492982..2493800(+) (pilX) [Acinetobacter baumannii strain Nord4-2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=652662 L5465_RS12520 WP_000149374.1 2492982..2493800(+) (pilX) [Acinetobacter baumannii strain Nord4-2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993