Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS24730 Genome accession   NZ_CP108070
Coordinates   5404000..5404689 (-) Length   229 a.a.
NCBI ID   WP_095854103.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5399000..5409689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS24710 (OG798_24790) - 5399620..5399997 (+) 378 Protein_4897 hypothetical protein -
  OG798_RS24715 (OG798_24795) - 5400067..5400219 (+) 153 Protein_4898 chaplin -
  OG798_RS24720 (OG798_24800) - 5401469..5403064 (+) 1596 WP_328757692.1 trypsin-like serine protease -
  OG798_RS24725 (OG798_24805) - 5403255..5403878 (+) 624 WP_121415835.1 DUF4232 domain-containing protein -
  OG798_RS24730 (OG798_24810) vraR 5404000..5404689 (-) 690 WP_095854103.1 response regulator transcription factor Regulator
  OG798_RS24735 (OG798_24815) - 5404691..5405875 (-) 1185 WP_328757693.1 sensor histidine kinase -
  OG798_RS24740 (OG798_24820) - 5405880..5408093 (-) 2214 WP_267062133.1 MMPL family transporter -
  OG798_RS24745 (OG798_24825) - 5408223..5408936 (-) 714 WP_120985316.1 hypothetical protein -
  OG798_RS24750 (OG798_24830) - 5408926..5409408 (-) 483 WP_267062134.1 DUF6114 domain-containing protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24352.19 Da        Isoelectric Point: 5.7997

>NTDB_id=652647 OG798_RS24730 WP_095854103.1 5404000..5404689(-) (vraR) [Streptomyces sp. NBC_00271]
MARPTTDQAAAPRATDRIRVIVVDDHTVMRAGVVALLASEPGIAIVGEAGNGREAVELVQSLAPDLALIDLRMPVLDGVA
ATAEIVAGRTSTRVLILTTYDTDVEIERAVEAGAIGYLLKDTTREQLVDAIRAAARGETVLAPKVAERLVARMRRPAPVA
LTGRELDVLNAVADGLSNAEIGKRLVIGEATVKTHLLRVFAKLDVSDRTHAVVVALERGLLVRPDREAL

Nucleotide


Download         Length: 690 bp        

>NTDB_id=652647 OG798_RS24730 WP_095854103.1 5404000..5404689(-) (vraR) [Streptomyces sp. NBC_00271]
ATGGCCCGACCGACGACCGACCAGGCGGCCGCGCCGCGGGCAACGGACAGGATCCGTGTGATCGTGGTGGACGACCACAC
CGTGATGCGGGCGGGAGTCGTCGCCCTCCTGGCGTCCGAGCCCGGAATCGCCATCGTCGGAGAGGCGGGCAACGGCAGGG
AGGCCGTCGAACTCGTCCAGAGCCTCGCGCCCGACCTGGCCCTCATCGACCTGCGTATGCCCGTCCTTGACGGCGTCGCC
GCGACCGCGGAGATCGTCGCCGGCAGGACATCGACCCGGGTGCTGATCCTCACCACCTACGACACGGATGTGGAGATCGA
GCGCGCCGTCGAGGCCGGAGCCATCGGCTACCTCCTGAAAGACACCACGCGCGAGCAACTGGTCGACGCCATCAGAGCCG
CGGCCCGCGGTGAGACGGTTCTGGCCCCGAAGGTGGCCGAACGCCTCGTCGCCCGCATGCGCCGCCCGGCCCCCGTGGCG
CTGACCGGCCGAGAACTGGACGTCCTGAACGCGGTGGCCGACGGTCTCTCCAACGCCGAGATCGGCAAACGCCTGGTCAT
CGGCGAGGCGACGGTGAAGACCCACCTCCTGCGCGTCTTCGCCAAACTGGACGTCAGCGACCGTACCCACGCGGTGGTCG
TGGCCCTGGAACGCGGACTGCTCGTACGCCCGGACCGGGAGGCGCTCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(20-132)

Bacterial regulatory proteins, luxR family (GerE)

(160-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.291

89.956

0.362