Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG798_RS24440 Genome accession   NZ_CP108070
Coordinates   5334900..5335901 (-) Length   333 a.a.
NCBI ID   WP_054233096.1    Uniprot ID   A0ABU3URY2
Organism   Streptomyces sp. NBC_00271     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5329900..5340901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS24425 (OG798_24505) - 5330984..5332558 (-) 1575 WP_267062114.1 MFS transporter -
  OG798_RS24430 (OG798_24510) - 5332621..5333676 (+) 1056 WP_267062115.1 YafY family protein -
  OG798_RS24435 (OG798_24515) - 5333753..5334328 (-) 576 WP_328760072.1 TetR family transcriptional regulator -
  OG798_RS24440 (OG798_24520) rpoS 5334900..5335901 (-) 1002 WP_054233096.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG798_RS24445 (OG798_24525) - 5336071..5336610 (+) 540 WP_095854144.1 GNAT family N-acetyltransferase -
  OG798_RS24450 (OG798_24530) - 5336629..5337441 (-) 813 WP_121415862.1 class III extradiol ring-cleavage dioxygenase -
  OG798_RS24455 (OG798_24535) - 5337575..5338084 (+) 510 WP_067376571.1 MarR family transcriptional regulator -
  OG798_RS24460 (OG798_24540) - 5338261..5339811 (-) 1551 WP_267062116.1 MFS transporter -
  OG798_RS24465 (OG798_24545) - 5340004..5340648 (-) 645 WP_095854141.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37387.14 Da        Isoelectric Point: 4.9035

>NTDB_id=652646 OG798_RS24440 WP_054233096.1 5334900..5335901(-) (rpoS) [Streptomyces sp. NBC_00271]
MATRAVARRQSATGETTDAARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQILDDEVDAPKA
DATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=652646 OG798_RS24440 WP_054233096.1 5334900..5335901(-) (rpoS) [Streptomyces sp. NBC_00271]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACCACCGACGCGGCACGCAGTGTTCGCGCCGTAGG
CGGCGAAATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCTCGGCAGATCCTCGACGACGAGGTCGATGCCCCCAAGGCG
GATGCGACCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGGGAGCGGGCCAAGGATGTCTTCATCCGCTCCAACCTGCG
GTTGGTCGTCGCCGTGGCCCGGCGGTATCCCCGTAGCGGCCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACGTGGTGGATCCGTCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGCCTCCCCGTGCACCTGGTCGAGGAGCTGGGCCGGATCCGTCG
CGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGCGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACCCCGG
AGCGTGTGACGGATGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGTGACACCCAG
TTCGGTGACCTCCTCGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAGCTCGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGGGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCTCGCGACACCGGTTTTGACGCGGCGGCTTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(101-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.09

0.363