Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG798_RS03225 Genome accession   NZ_CP108070
Coordinates   611234..611905 (-) Length   223 a.a.
NCBI ID   WP_328756191.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00271     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 606234..616905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS03200 (OG798_03210) - 606424..606861 (+) 438 WP_328756185.1 helix-turn-helix domain-containing protein -
  OG798_RS03205 (OG798_03215) - 607385..608329 (+) 945 WP_328756186.1 hypothetical protein -
  OG798_RS03210 (OG798_03220) - 608667..610370 (-) 1704 WP_328756187.1 3'-5' exonuclease -
  OG798_RS03215 (OG798_03225) - 610759..610917 (-) 159 WP_328756188.1 hypothetical protein -
  OG798_RS03220 (OG798_03230) - 610926..611141 (-) 216 WP_328756190.1 hypothetical protein -
  OG798_RS03225 (OG798_03235) dinR/lexA 611234..611905 (-) 672 WP_328756191.1 transcriptional repressor LexA Regulator
  OG798_RS03230 (OG798_03240) - 612050..612193 (-) 144 WP_328756193.1 hypothetical protein -
  OG798_RS03235 (OG798_03245) - 612286..613408 (+) 1123 Protein_642 IS630 family transposase -
  OG798_RS03240 (OG798_03250) - 613452..614234 (+) 783 WP_267060315.1 class I SAM-dependent methyltransferase -
  OG798_RS03245 (OG798_03255) - 614521..615129 (-) 609 WP_121417928.1 TetR/AcrR family transcriptional regulator -
  OG798_RS03250 (OG798_03260) - 615310..615762 (+) 453 WP_097227171.1 DUF1801 domain-containing protein -
  OG798_RS03255 (OG798_03265) - 615974..616879 (-) 906 WP_328756195.1 3-hydroxyacyl-CoA dehydrogenase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24132.66 Da        Isoelectric Point: 6.1200

>NTDB_id=652610 OG798_RS03225 WP_328756191.1 611234..611905(-) (dinR/lexA) [Streptomyces sp. NBC_00271]
MENSAPARPGRPPGPRTAEGELTSRQSAIVRYITESVARQGYPPSMREIGKAVELASTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGGRSEAPVHVPLVGRIAAGAPLLAEEMVEDVYSMPRQVVGDGDLFALTVVGDSMIDAAICDGDIVT
VRKMDSADHGDIVAALLDDEATIKVLRRQDGQVWLMPRNPAYEPIPGDQAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=652610 OG798_RS03225 WP_328756191.1 611234..611905(-) (dinR/lexA) [Streptomyces sp. NBC_00271]
ATGGAGAACAGCGCGCCCGCACGCCCGGGCCGTCCCCCGGGCCCTCGGACCGCCGAGGGAGAGCTGACGAGCCGCCAGTC
GGCCATCGTCCGTTACATCACGGAGTCGGTCGCCCGGCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTGG
AGCTCGCCAGTACGTCCTCGGTCGCCCACCAGCTGATGGCCCTCGAGCGCAAAGGCGTTCTCTACCGTGACCCGCACCGT
CCCCGCGCCTACCGGGTGCGGCCTTCCTGGGCACCCGACCTGGGAGGCAGGAGCGAGGCGCCGGTCCACGTGCCGCTCGT
CGGACGGATCGCCGCCGGCGCACCCCTGCTCGCCGAGGAGATGGTCGAGGACGTCTACTCCATGCCCCGCCAGGTCGTGG
GCGACGGTGACTTGTTCGCCCTGACCGTGGTTGGCGACTCCATGATCGACGCGGCAATCTGCGACGGCGACATCGTCACC
GTGCGGAAGATGGACAGCGCCGACCACGGCGACATCGTCGCTGCCTTGCTGGACGACGAGGCCACGATCAAGGTGCTGCG
CCGGCAGGACGGCCAGGTGTGGCTGATGCCCCGCAACCCAGCCTACGAGCCCATTCCCGGTGACCAGGCGCAGATTCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.842

91.031

0.399