Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG827_RS30655 Genome accession   NZ_CP108068
Coordinates   6605721..6606350 (-) Length   209 a.a.
NCBI ID   WP_327279362.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6600721..6611350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS30640 (OG827_30650) aceB 6601273..6602892 (-) 1620 WP_327279358.1 malate synthase A -
  OG827_RS30645 (OG827_30655) - 6603166..6603795 (-) 630 WP_328764229.1 nucleotidyltransferase family protein -
  OG827_RS30650 (OG827_30660) - 6604040..6605527 (+) 1488 WP_328764230.1 PLP-dependent aminotransferase family protein -
  OG827_RS30655 (OG827_30665) vraR 6605721..6606350 (-) 630 WP_327279362.1 response regulator transcription factor Regulator
  OG827_RS30660 (OG827_30670) - 6606350..6607690 (-) 1341 WP_327279363.1 sensor histidine kinase -
  OG827_RS30665 (OG827_30675) - 6607825..6608913 (+) 1089 WP_328764231.1 ABC transporter permease -
  OG827_RS30670 (OG827_30680) - 6608910..6609611 (+) 702 WP_328764232.1 ABC transporter ATP-binding protein -
  OG827_RS30675 (OG827_30685) - 6609702..6610505 (-) 804 WP_327279366.1 IclR family transcriptional regulator -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 21838.19 Da        Isoelectric Point: 6.1066

>NTDB_id=652596 OG827_RS30655 WP_327279362.1 6605721..6606350(-) (vraR) [Streptomyces sp. NBC_00272]
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAASEPVDVVLMDLQFGAGMHGSAATAAITARPGAPRV
LVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADG
LSNQQISKKLFLSQATVKSHLVHIYAKLGVDSRTSAVAAAATRRLIRTP

Nucleotide


Download         Length: 630 bp        

>NTDB_id=652596 OG827_RS30655 WP_327279362.1 6605721..6606350(-) (vraR) [Streptomyces sp. NBC_00272]
ATGACGATCCGCCTGCTGCTGGCCGACGACCACCCGGTGGTCCGGGCCGGACTGCGCGCGGTGCTGGACACCGAGCCGGA
CTTCGCGGTGGTCGCGGAGGCCGCCACCGCCGAGCGGGCGGTGGAGCTGGCCGCTTCCGAGCCCGTGGACGTGGTCCTGA
TGGACCTCCAGTTCGGCGCGGGCATGCACGGCTCGGCGGCGACGGCGGCGATCACCGCCCGCCCCGGGGCGCCGCGGGTC
CTGGTGCTGACCACGTACGACACGGACGCCGACATCCTGGCGGCGGTCGAGGCGGGCGCGTCGGGCTATCTGCTGAAGGA
CGCCCCGCCGGAGGAGCTCGCGGCGGCGGTCCGCACCGCGGCGGCGGGCCAGTCGGCGCTGGCCCCGGCGGTGGCGCTGC
GGCTGATGGACCGCATGCGCACGCCCGCGGAGGCGCTGACGAAGCGGGAGCTGGAAGTGCTCCAGCTGGTCGCGGACGGG
CTGTCGAACCAGCAGATCTCGAAGAAGCTGTTCCTGAGCCAGGCCACGGTCAAGTCCCACCTGGTGCACATCTACGCGAA
GCTCGGCGTCGACTCCCGCACCTCGGCGGTGGCCGCCGCCGCCACCCGCCGCCTGATCCGCACCCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(145-199)

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.095

100

0.383