Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG827_RS13545 Genome accession   NZ_CP108068
Coordinates   2875692..2876837 (-) Length   381 a.a.
NCBI ID   WP_327283317.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00272     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2870692..2881837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG827_RS13535 (OG827_13535) rcrP 2871989..2873722 (+) 1734 WP_327283315.1 ABC transporter ATP-binding protein Regulator
  OG827_RS13540 (OG827_13540) rcrQ 2873719..2875641 (+) 1923 WP_327283316.1 ABC transporter ATP-binding protein Regulator
  OG827_RS13545 (OG827_13545) rpoS 2875692..2876837 (-) 1146 WP_327283317.1 RNA polymerase sigma factor Regulator
  OG827_RS13550 (OG827_13550) - 2877042..2879123 (-) 2082 WP_328762679.1 molybdopterin oxidoreductase family protein -
  OG827_RS13555 (OG827_13555) - 2879170..2879322 (-) 153 WP_327283319.1 hypothetical protein -
  OG827_RS13560 (OG827_13565) - 2879719..2880396 (-) 678 WP_327283320.1 ElyC/SanA/YdcF family protein -
  OG827_RS13565 (OG827_13570) - 2880727..2881506 (+) 780 WP_327283321.1 sirohydrochlorin chelatase -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42546.62 Da        Isoelectric Point: 4.8294

>NTDB_id=652549 OG827_RS13545 WP_327283317.1 2875692..2876837(-) (rpoS) [Streptomyces sp. NBC_00272]
MSYSTLRCGAPVLGALEVAPVQTQILTVNVSPPVHDAEATAGEEPEVDAVDDEPEEPEVLELIEPAPEPRRRADSGGAGP
SADLFRQYLREIGRIPLLSAAEEVELARRVEAGLFAEEKLGGSPDLDLRLALDLDKLVVMGRMAKRRLIESNLRLVVSVA
KRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRML
QERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPMESAAFFLLREHLEAVLSTL
GERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=652549 OG827_RS13545 WP_327283317.1 2875692..2876837(-) (rpoS) [Streptomyces sp. NBC_00272]
GTGTCGTACTCCACACTGAGGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCAGATCCTGAC
CGTCAACGTGAGCCCGCCCGTGCACGACGCCGAGGCCACTGCGGGTGAAGAGCCCGAGGTCGACGCCGTGGACGACGAGC
CCGAAGAGCCCGAGGTGCTGGAGCTGATCGAGCCGGCGCCCGAGCCGCGCCGGCGCGCGGACAGCGGCGGAGCGGGCCCT
TCCGCCGACCTGTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTCTCCGCCGCCGAGGAGGTCGAGCTCGC
GCGCCGCGTCGAAGCCGGCCTGTTCGCCGAGGAGAAGCTGGGCGGCAGTCCCGACCTCGATCTGCGGCTCGCCCTCGACC
TCGACAAGCTCGTCGTCATGGGGCGGATGGCCAAGAGGCGCCTCATCGAGTCCAACCTGCGGCTCGTCGTCTCCGTCGCC
AAGCGCTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTTGAGAA
GTTCGACTACGCCCGCGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCCATGTCGCGGGCCCTCGCCG
ACCAGGCCCGCACCATCCGCGTGCCCGTCCATGTCGTCGAGCTGATCAACCGCGTCGTGCGCGTCCAGCGCCGCATGCTC
CAGGAACGCGGGTACGAACCCACCGCCGAAGAGGTCGCCGTTCATCTGGAGCTGACGCCCGAGCGCGTCCTGGAGGTGCT
GCGCCTCGCCCAGGAGCCGGTCTCGCTCCACGCGCCCGTCGGTGAGGAGGACGACGTCGCCCTCGGCGACCTGATCGAGG
ACGGGGACGCCGCCTCGCCCATGGAGTCCGCCGCGTTCTTCCTGCTCCGCGAACACCTGGAAGCCGTCCTGTCGACCCTC
GGCGAGCGCGAGCGCAAGGTCGTCCAGCTGCGCTACGGCCTGGCCGACGGCAGGCCCCGCACGCTGGAGGAGATCGGGCG
GATCTTCGGCGTGACGCGCGAGCGGATCCGCCAGATCGAGTCCAAGACGCTCAACAAGCTGCGTGACCACGCCTTCGCCG
ACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(83-116)

Sigma-70, region 4 (Sigma70_r4)

(316-368)

Sigma-70 region 3 (Sigma70_r3)

(227-303)

Sigma-70 region 2 (Sigma70_r2)

(148-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

42.593

85.039

0.362