Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG386_RS37695 Genome accession   NZ_CP108067
Coordinates   8440173..8440841 (+) Length   222 a.a.
NCBI ID   WP_328791837.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8435173..8445841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS37665 (OG386_37670) - 8435317..8436612 (-) 1296 WP_328791834.1 streptophobe family protein -
  OG386_RS37670 (OG386_37675) - 8436879..8437298 (-) 420 WP_328793589.1 hypothetical protein -
  OG386_RS37675 - 8437192..8437593 (+) 402 Protein_7438 DUF6777 domain-containing protein -
  OG386_RS37680 (OG386_37685) - 8437611..8438213 (-) 603 WP_328793590.1 hypothetical protein -
  OG386_RS37685 (OG386_37690) - 8438524..8438772 (-) 249 WP_328791835.1 hypothetical protein -
  OG386_RS37690 (OG386_37695) - 8438898..8440073 (+) 1176 WP_328791836.1 histidine kinase -
  OG386_RS37695 (OG386_37700) vraR 8440173..8440841 (+) 669 WP_328791837.1 response regulator transcription factor Regulator
  OG386_RS37700 (OG386_37705) - 8440992..8443061 (+) 2070 WP_328791838.1 SpoIIE family protein phosphatase -
  OG386_RS37705 (OG386_37710) - 8443334..8445328 (-) 1995 WP_328791839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23488.16 Da        Isoelectric Point: 6.6131

>NTDB_id=652516 OG386_RS37695 WP_328791837.1 8440173..8440841(+) (vraR) [Streptomyces sp. NBC_00273]
MIRVLLVDDDAIVRAGLRLMLGGAPDIELVAEAADGAEVPDLVAAHGPHLVLMDIRMPGVDGLAATERLRAQPGAPEVLV
LTTFHTDAHVLRALRAGAAGFLLKDTPPQEIVTAIRTVAAGDPVLSPAVTRRLIDQVAGDFGEDTRATAARARLELLAGR
EREVALAVGRGLSNAEIGRELHLALPTVKTHVSRILTRLDLNNRVQIALLVHDANLSGGGRR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652516 OG386_RS37695 WP_328791837.1 8440173..8440841(+) (vraR) [Streptomyces sp. NBC_00273]
GTGATCCGCGTACTGCTGGTCGATGACGACGCGATCGTCCGCGCGGGGTTGCGCCTGATGCTGGGCGGCGCCCCGGACAT
CGAGCTGGTCGCGGAGGCCGCGGACGGGGCGGAGGTGCCCGATCTGGTCGCCGCGCACGGACCGCACCTGGTGCTGATGG
ACATCCGGATGCCCGGCGTCGACGGGCTGGCCGCCACCGAGCGGCTCCGGGCGCAACCGGGAGCGCCGGAGGTGCTGGTC
CTGACCACCTTCCACACCGACGCGCACGTCCTGCGCGCACTGCGGGCCGGAGCGGCCGGGTTCCTCCTCAAGGACACCCC
GCCGCAGGAGATCGTGACGGCCATCCGGACGGTGGCCGCCGGGGACCCGGTGCTCTCCCCGGCCGTCACCCGCCGGCTCA
TCGACCAGGTGGCGGGCGACTTCGGCGAGGACACCCGGGCGACCGCCGCCCGCGCCCGGCTGGAGCTGCTGGCCGGGCGC
GAGCGGGAGGTGGCCCTGGCGGTCGGGCGGGGCCTGTCCAACGCGGAGATCGGACGGGAGCTCCACCTGGCGCTGCCCAC
GGTGAAGACCCACGTGTCCCGGATCCTGACCCGGCTGGACCTCAACAACCGCGTTCAGATCGCCCTGTTGGTCCATGACG
CGAACCTTTCGGGCGGCGGACGGCGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-210)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.156

98.198

0.365