Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG386_RS25620 Genome accession   NZ_CP108067
Coordinates   5792979..5793956 (+) Length   325 a.a.
NCBI ID   WP_266595516.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5787979..5798956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS25595 (OG386_25610) - 5788315..5789025 (+) 711 WP_328790064.1 TetR/AcrR family transcriptional regulator -
  OG386_RS25600 (OG386_25615) - 5789088..5790620 (+) 1533 WP_328790065.1 MFS transporter -
  OG386_RS25605 (OG386_25620) - 5790738..5791499 (+) 762 WP_328793352.1 class III extradiol ring-cleavage dioxygenase -
  OG386_RS25610 (OG386_25625) - 5791496..5792140 (-) 645 WP_328790066.1 Uma2 family endonuclease -
  OG386_RS25615 (OG386_25630) - 5792244..5792774 (-) 531 WP_328790067.1 N-acetyltransferase family protein -
  OG386_RS25620 (OG386_25635) rpoS 5792979..5793956 (+) 978 WP_266595516.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG386_RS25625 (OG386_25640) - 5794131..5795087 (-) 957 WP_328790068.1 YafY family protein -
  OG386_RS25630 (OG386_25645) - 5795150..5796712 (+) 1563 WP_328790069.1 MFS transporter -
  OG386_RS25635 (OG386_25650) - 5796822..5798312 (-) 1491 WP_328790070.1 cellulose binding domain-containing protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36493.20 Da        Isoelectric Point: 4.9578

>NTDB_id=652489 OG386_RS25620 WP_266595516.1 5792979..5793956(+) (rpoS) [Streptomyces sp. NBC_00273]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDSTIERDGDAPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRIQREFNRENGRDPEHAEIAAELDSTEKRVGDVLDWARDPVSLNMAVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDKRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKRMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=652489 OG386_RS25620 WP_266595516.1 5792979..5793956(+) (rpoS) [Streptomyces sp. NBC_00273]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACGAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCAGACCGTGACCT
GGTCGGCATGTATCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAAGAAGTGGAGCTCTCCCAGATCATCG
AGGCGGGCGTCTACGCCCAGCAGATCCTCGACAGCACGATAGAACGTGACGGGGACGCCCCGGCCCGCGAGGAGCTGGAG
GCGCTGGCCGCCGAGGGCGAGCGGGCCAAGGAAGTCTTCATCCGCTCGAACCTGCGCCTCGTCGTGGCCGTGGCCCGGCG
CTATCCGCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTCCGTGCGGTCGAAAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCCACGTGGTGGATCCGGCAGGCGATCACCCGGTCCATCGCGGACCAG
TCCCGCACCATCCGCCTCCCCGTCCACCTCGTCGAGGAGCTCGGCCGGATCCGCCGCATCCAGCGGGAATTCAACCGGGA
GAACGGCCGCGACCCGGAGCACGCCGAGATCGCCGCCGAGCTGGACTCCACGGAGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTCAACATGGCGGTCGACGACGACGGCGACACCCAGTTCGGTGACCTCCTGGAGGACACC
TCGGCGATCTCGCCCGAGCAGTCCGTGCTCTCCCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACAA
GCGCACGGCGTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACGCTGACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTGAAGCGGATGGCGCGTGACACCGGC
TTCGACGCCGTGGCCTAG

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70, region 4 (Sigma70_r4)

(261-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40

92.308

0.369