Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG386_RS14715 Genome accession   NZ_CP108067
Coordinates   3524597..3525814 (-) Length   405 a.a.
NCBI ID   WP_328788552.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00273     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3519597..3530814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS14695 (OG386_14695) - 3519913..3520251 (-) 339 WP_030009357.1 P-II family nitrogen regulator -
  OG386_RS14700 (OG386_14700) - 3520248..3521591 (-) 1344 WP_328788549.1 ammonium transporter -
  OG386_RS14705 (OG386_14705) - 3521904..3523394 (-) 1491 WP_328788550.1 hypothetical protein -
  OG386_RS14710 (OG386_14710) - 3523815..3524483 (+) 669 WP_328788551.1 bifunctional DNA primase/polymerase -
  OG386_RS14715 (OG386_14715) pilA 3524597..3525814 (-) 1218 WP_328788552.1 signal recognition particle-docking protein FtsY Machinery gene
  OG386_RS14720 (OG386_14720) - 3525959..3527422 (+) 1464 WP_328788553.1 cytosine permease -
  OG386_RS14725 (OG386_14725) - 3527486..3528472 (+) 987 WP_030009363.1 LLM class flavin-dependent oxidoreductase -
  OG386_RS14730 (OG386_14730) - 3528514..3529947 (-) 1434 WP_328788554.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 42445.67 Da        Isoelectric Point: 4.4238

>NTDB_id=652460 OG386_RS14715 WP_328788552.1 3524597..3525814(-) (pilA) [Streptomyces sp. NBC_00273]
MDILILAVVIALVAVGVISGLVVSSRKKKQLPPPAPPSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVGLPEAAAPVEA
PVVEPVPAAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLVADVGVVPTQELVDR
LRERVKVLGTRTPADLRTLLKEELLTLVGTDFDRAVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVLGA
ADTFRAAAADQLQTWGERVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHG
PLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLIGLGEGPDDLAPFEPEAFVD
ALIGD

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=652460 OG386_RS14715 WP_328788552.1 3524597..3525814(-) (pilA) [Streptomyces sp. NBC_00273]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGTGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCGCCGGCACCGCCGAGCACGCCGACCATCACTGCTCCGCCTGCCGAGCCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGCCGCACGATCGAGGAGGTCGGACTCCCGGAGGCCGCAGCTCCCGTCGAGGCG
CCGGTAGTCGAACCCGTGCCCGCGGCCCCGGCCGCGCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGGCGCCTGGTCCG
GCTGCGCGCCCGCCTGGCCCGGTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGGGAGCACCTCGACG
AGGACACCTGGGAGGAGATCGAGGAGACCCTCCTCGTCGCCGACGTCGGTGTCGTGCCGACCCAGGAGCTCGTGGACCGG
CTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGGACCCCGGCGGACCTGCGCACCCTGCTCAAGGAGGAGCTGCTGACCCT
GGTCGGCACCGACTTCGACCGCGCCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGCGTGATCATGGTCGTCGGCGTCA
ACGGCACCGGCAAGACCACCACCACCGGCAAGCTGGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTCGGCGCG
GCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGTACCGTACGCGGCCC
CGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCATCG
ACACCGCGGGCCGCCTGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGT
CCGCTGGACGAGATCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGTGTCTTCGCCGAGGT
CGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAAC
TGGGCGTACCGGTGAAGCTCATCGGCCTCGGTGAGGGTCCGGACGACCTGGCGCCCTTCGAGCCGGAGGCGTTCGTGGAC
GCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(119-184)

SRP54-type protein, GTPase domain (SRP54)

(206-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.964

100

0.42