Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG386_RS13825 Genome accession   NZ_CP108067
Coordinates   3309560..3310354 (+) Length   264 a.a.
NCBI ID   WP_150259859.1    Uniprot ID   A0ABQ3SEY5
Organism   Streptomyces sp. NBC_00273     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3304560..3315354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG386_RS13810 (OG386_13805) - 3305018..3305413 (+) 396 WP_328788426.1 helix-turn-helix domain-containing protein -
  OG386_RS13815 (OG386_13810) - 3305546..3308434 (-) 2889 WP_328788427.1 vitamin B12-dependent ribonucleotide reductase -
  OG386_RS13820 (OG386_13815) nrdR 3308579..3309091 (-) 513 WP_030008840.1 transcriptional regulator NrdR -
  OG386_RS13825 (OG386_13820) dinR/lexA 3309560..3310354 (+) 795 WP_150259859.1 transcriptional repressor LexA Regulator
  OG386_RS13830 (OG386_13825) - 3310436..3312406 (-) 1971 WP_328788428.1 ATP-dependent DNA helicase -
  OG386_RS13835 (OG386_13830) - 3312459..3314387 (-) 1929 WP_328788429.1 IucA/IucC family siderophore biosynthesis protein -
  OG386_RS13840 (OG386_13835) - 3314487..3315200 (-) 714 WP_328788431.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28558.35 Da        Isoelectric Point: 7.4239

>NTDB_id=652455 OG386_RS13825 WP_150259859.1 3309560..3310354(+) (dinR/lexA) [Streptomyces sp. NBC_00273]
MTTTADSAAITAQNRSQSRLEPVHAMNDANLNPDAEPAVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=652455 OG386_RS13825 WP_150259859.1 3309560..3310354(+) (dinR/lexA) [Streptomyces sp. NBC_00273]
GTGACCACCACCGCAGACAGTGCCGCCATTACCGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCTGAACCCGGATGCGGAGCCCGCAGTACGCCCCGCACGCTCGCTGCCAGGTCGACCTCCAGGCATCCGCG
CCGACAGCTCCGGGCTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGGCGGGGTTACCCG
CCGTCGATGCGGGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACCTCGTCGGTCGCACACCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGTGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCCAGCTCGCAGCCCA
CGGACACCACCGGCAAGCCCGCCGCCTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGTGACGGCGACTGGGTCACGGTCCGTCGCCAGCCGGTCGCGGAGAACGGTGACATCG
TCGCCGCGATGCTCGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTACTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375