Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS45435 Genome accession   NZ_CP108059
Coordinates   10282159..10282824 (-) Length   221 a.a.
NCBI ID   WP_371664703.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 10277159..10287824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS45420 (OG960_45435) - 10277644..10278624 (+) 981 WP_371664700.1 xanthine dehydrogenase family protein subunit M -
  OG960_RS45425 (OG960_45440) - 10278621..10280807 (+) 2187 WP_371664701.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
  OG960_RS45430 (OG960_45445) - 10280961..10282127 (+) 1167 WP_371664702.1 XdhC family protein -
  OG960_RS45435 (OG960_45450) vraR 10282159..10282824 (-) 666 WP_371664703.1 response regulator Regulator
  OG960_RS45440 (OG960_45455) - 10282821..10284092 (-) 1272 WP_371664704.1 sensor histidine kinase -
  OG960_RS45445 (OG960_45460) - 10284201..10284401 (-) 201 WP_371664705.1 hypothetical protein -
  OG960_RS45450 (OG960_45465) - 10284406..10284861 (-) 456 WP_327699890.1 MarR family transcriptional regulator -
  OG960_RS45455 (OG960_45470) - 10285045..10285500 (-) 456 WP_371664706.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG960_RS45460 (OG960_45475) - 10285574..10286389 (+) 816 WP_371664707.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23828.36 Da        Isoelectric Point: 4.9378

>NTDB_id=652430 OG960_RS45435 WP_371664703.1 10282159..10282824(-) (vraR) [Streptomyces sp. NBC_00280]
MTIRVLLADDQALVRTSFRMLIESEPDMSVVGEAATGEEAVELARSTLADVVLMDIRMPDMDGLAATRAISADEDLAGVR
VLILTTFEADEHVFRALRAGASGFLGKSVELSYLLDAIRLVALGEALLSPRATRALIAHYLTTPDRTSAPVPELTTLTDR
ERQVLDFVAAGLSNDAIAEQLGISPSTAKTHVNRIMTKLHVRDRAQLVMIAYQTGHAHPGA

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652430 OG960_RS45435 WP_371664703.1 10282159..10282824(-) (vraR) [Streptomyces sp. NBC_00280]
ATGACCATCCGCGTTCTGCTCGCCGACGACCAGGCCCTCGTCCGCACCAGTTTCCGCATGCTCATCGAGTCGGAGCCGGA
CATGTCGGTCGTCGGAGAGGCGGCGACGGGCGAAGAGGCGGTCGAACTGGCCCGCAGCACCCTTGCCGATGTCGTGCTGA
TGGACATCCGGATGCCCGACATGGACGGTCTCGCCGCCACGCGCGCCATCTCGGCGGACGAGGACCTCGCAGGCGTACGA
GTGCTCATCCTGACGACCTTCGAAGCCGACGAGCACGTCTTCCGGGCGCTGCGTGCCGGGGCCAGCGGATTCCTCGGCAA
GAGTGTGGAGCTCTCCTACCTACTCGACGCCATCCGGCTGGTCGCTCTCGGAGAGGCGTTGCTGTCACCCAGGGCGACCA
GGGCACTCATCGCCCACTACCTCACCACACCCGACAGGACGAGCGCTCCGGTCCCGGAGTTGACGACCCTGACCGACCGC
GAGCGCCAAGTGCTCGATTTCGTGGCTGCCGGCCTCTCCAACGATGCCATCGCCGAACAGCTCGGCATCTCGCCCTCGAC
CGCCAAGACACACGTGAACCGCATCATGACCAAGCTCCACGTCCGCGACCGCGCCCAACTCGTCATGATCGCCTACCAGA
CCGGCCACGCTCACCCCGGCGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.559

96.38

0.362