Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG960_RS44620 Genome accession   NZ_CP108059
Coordinates   10105838..10106860 (-) Length   340 a.a.
NCBI ID   WP_327699754.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10100838..10111860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS44600 - 10101338..10101985 (+) 648 WP_371664568.1 alpha-L-fucosidase -
  OG960_RS44605 - 10102006..10103142 (+) 1137 WP_371749237.1 RICIN domain-containing protein -
  OG960_RS44610 (OG960_44630) - 10103355..10104326 (+) 972 WP_371664569.1 expansin EXLX1 family cellulose-binding protein -
  OG960_RS44615 (OG960_44635) - 10104461..10105609 (-) 1149 WP_371664570.1 cellulose binding domain-containing protein -
  OG960_RS44620 (OG960_44640) cytR 10105838..10106860 (-) 1023 WP_327699754.1 LacI family DNA-binding transcriptional regulator Regulator
  OG960_RS44625 (OG960_44645) - 10107237..10110155 (-) 2919 WP_371664571.1 glycoside hydrolase family 48 protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37095.21 Da        Isoelectric Point: 5.3583

>NTDB_id=652429 OG960_RS44620 WP_327699754.1 10105838..10106860(-) (cytR) [Streptomyces sp. NBC_00280]
MGKRRPGTPTLEEVAVHARVGRGTVSRVINNAAGVKESTRRAVQRAIEELGYVPNLAARSLAGRRADAVALVMTEPDWRQ
FAEPFFSEIVRSLGDALTDTGIQLLLTLVRSDTERQRFLEYARGGRVDGVLLMSVHAGDPLPDMLAEARLPTVLLGRRSG
EEYVSYVDADNIGGARSAVSHLLRQGRRAIATITGPLDLYAAQCRLRGYEEALAMAGLEGEPTRVAESDFTAESGRRAMA
ELLERYPDIDGVLAASDTTAAGALEALRAAGRRVPEDVAVIGFDDFSLARRTDPPLTTVRQPIEEIGRAMIRLLLEEMEE
GAVAWRHVILRTELVVREST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=652429 OG960_RS44620 WP_327699754.1 10105838..10106860(-) (cytR) [Streptomyces sp. NBC_00280]
ATGGGAAAACGACGCCCGGGCACACCGACGCTGGAGGAAGTGGCCGTCCACGCGCGGGTGGGACGCGGCACGGTCTCCCG
TGTCATCAACAACGCGGCGGGCGTGAAGGAGTCGACGCGTCGGGCCGTCCAGCGAGCCATCGAGGAACTGGGCTACGTGC
CCAATCTCGCGGCCCGTTCACTGGCCGGGCGGCGAGCCGACGCCGTCGCCCTGGTCATGACGGAGCCGGACTGGCGGCAG
TTCGCCGAGCCCTTCTTCTCCGAGATCGTCCGCTCGCTCGGAGACGCGCTCACGGACACCGGGATCCAACTCCTGCTGAC
CCTGGTCCGCTCGGACACCGAGCGGCAGCGCTTCCTCGAGTACGCGCGCGGCGGCCGGGTCGACGGAGTGCTGCTGATGT
CCGTGCACGCCGGTGACCCGCTGCCCGACATGCTCGCCGAAGCCCGGTTGCCGACCGTGCTGCTCGGGCGCCGCTCGGGC
GAGGAATACGTCAGCTATGTCGACGCCGACAACATCGGCGGAGCCCGCAGCGCCGTCTCCCACCTGCTGCGACAGGGCCG
CAGAGCGATAGCGACCATCACCGGGCCGCTCGACCTGTACGCAGCACAGTGTCGACTGCGCGGCTACGAAGAGGCCCTGG
CGATGGCGGGCCTGGAGGGCGAGCCGACACGTGTCGCCGAAAGCGACTTCACGGCGGAGAGCGGACGCCGTGCCATGGCC
GAACTCCTCGAACGGTATCCGGACATCGACGGCGTCCTCGCCGCGTCGGACACCACAGCCGCGGGGGCCCTGGAGGCCCT
GCGCGCGGCCGGCCGTCGGGTGCCCGAGGATGTCGCCGTGATCGGGTTCGACGACTTTTCGCTGGCCCGGCGGACCGACC
CTCCCCTGACCACGGTGCGCCAGCCGATCGAGGAGATCGGGCGGGCCATGATCCGACTGCTCCTGGAGGAGATGGAGGAG
GGCGCCGTGGCCTGGCGTCACGTCATCCTCCGTACGGAGCTGGTGGTTCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.283

99.706

0.362