Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG960_RS39800 Genome accession   NZ_CP108059
Coordinates   8990197..8991201 (-) Length   334 a.a.
NCBI ID   WP_371663739.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 8985197..8996201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS39780 (OG960_39840) - 8985355..8985546 (-) 192 WP_371663735.1 integrase core domain-containing protein -
  OG960_RS39785 (OG960_39845) - 8985901..8986749 (+) 849 WP_371663736.1 DUF429 domain-containing protein -
  OG960_RS39790 (OG960_39850) sthA 8986910..8988313 (-) 1404 WP_371663737.1 Si-specific NAD(P)(+) transhydrogenase -
  OG960_RS39795 (OG960_39855) - 8988438..8989748 (-) 1311 WP_371663738.1 DUF3533 domain-containing protein -
  OG960_RS39800 (OG960_39860) rpoS 8990197..8991201 (-) 1005 WP_371663739.1 RNA polymerase sigma factor Regulator
  OG960_RS39805 (OG960_39865) - 8991508..8991900 (-) 393 WP_371663740.1 SCO5389 family protein -
  OG960_RS39810 (OG960_39870) - 8991966..8992916 (-) 951 WP_371663741.1 ATP-binding protein -
  OG960_RS39815 (OG960_39875) - 8993101..8993637 (+) 537 WP_371663742.1 GNAT family N-acetyltransferase -
  OG960_RS39820 (OG960_39880) - 8993787..8995289 (+) 1503 WP_371663743.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37476.64 Da        Isoelectric Point: 4.8079

>NTDB_id=652423 OG960_RS39800 WP_371663739.1 8990197..8991201(-) (rpoS) [Streptomyces sp. NBC_00280]
MATDTEVTDVFDPATEDESDAPLPRLATAGGSVDQVRDYLRLIARVRLLSAEQEVDLAKRIEAGLYAEHKLLEDPPESPA
LQRELEILIADGERAKSHLIEANLRLVVSVAKRYTGRGLLFLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWWIRQAIS
RALADQGRTIRIPVHLVEVINRVARTRRELIQDFGTEPTPEELAEKAGVPVERLPELTAYTREPVSLHTALGEDGDGELG
DLIEDRDSVTPMEMVTFLLLQETIQSILAEMTPREAGIISLRYGLSGGRTRTLEEIGQVYGVTRERIRQIESKTMSKLRH
PSRSQVLRDYLDAM

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=652423 OG960_RS39800 WP_371663739.1 8990197..8991201(-) (rpoS) [Streptomyces sp. NBC_00280]
ATGGCGACCGATACCGAGGTGACCGATGTGTTCGACCCGGCCACCGAGGACGAGAGCGATGCTCCCCTCCCCCGGCTGGC
CACCGCGGGAGGGTCGGTCGACCAGGTGCGGGACTACCTCCGGCTGATCGCCCGGGTCCGGCTCCTCAGCGCCGAGCAGG
AGGTCGACCTCGCGAAACGGATCGAGGCCGGACTGTACGCCGAGCACAAACTGCTGGAGGACCCACCCGAAAGCCCCGCA
CTCCAGCGGGAGTTGGAGATCCTCATCGCGGACGGGGAGCGCGCAAAGTCCCACCTCATCGAGGCGAACCTCCGCCTGGT
CGTGTCCGTCGCCAAGCGTTACACGGGCCGCGGACTGCTGTTCCTGGACCTGGTCCAGGAGGGCAACACGGGTCTGATCC
GGGCCGTCGAGAAGTTCGACTACGCGAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGGCAGGCGATCTCC
CGCGCGCTGGCGGACCAGGGCCGGACCATCCGCATTCCCGTGCATCTCGTGGAGGTCATCAACCGGGTGGCCCGCACCCG
CCGCGAGCTGATCCAGGACTTCGGGACGGAGCCCACACCGGAGGAACTCGCGGAGAAGGCGGGCGTCCCCGTGGAACGGC
TGCCGGAGCTCACCGCCTACACCAGGGAGCCCGTCTCACTGCACACCGCCCTCGGCGAGGACGGCGACGGCGAACTCGGC
GACCTGATCGAGGACCGGGACAGCGTCACCCCCATGGAGATGGTCACCTTCCTGCTGCTCCAGGAGACCATCCAGTCCAT
CCTCGCGGAGATGACCCCCCGGGAGGCCGGCATCATCTCCCTGCGCTACGGCCTGTCCGGCGGCCGAACCAGAACACTGG
AGGAGATCGGCCAGGTGTACGGCGTGACGCGCGAACGCATCCGCCAGATCGAGTCCAAGACGATGTCGAAACTGCGCCAC
CCGTCCCGCTCCCAGGTGCTGCGGGACTACCTCGACGCCATGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(36-67)

Sigma-70 region 3 (Sigma70_r3)

(178-255)

Sigma-70, region 4 (Sigma70_r4)

(268-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.875

96.108

0.383