Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG960_RS35245 Genome accession   NZ_CP108059
Coordinates   7910228..7911007 (-) Length   259 a.a.
NCBI ID   WP_164318350.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7905228..7916007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS35235 (OG960_35280) - 7907221..7907982 (+) 762 WP_371662960.1 GNAT family N-acetyltransferase -
  OG960_RS35240 (OG960_35285) - 7908067..7910079 (+) 2013 WP_371662961.1 ATP-dependent DNA helicase -
  OG960_RS35245 (OG960_35290) dinR/lexA 7910228..7911007 (-) 780 WP_164318350.1 transcriptional repressor LexA Regulator
  OG960_RS35250 (OG960_35295) nrdR 7911550..7912101 (+) 552 WP_371662962.1 transcriptional regulator NrdR -
  OG960_RS35255 (OG960_35300) - 7912268..7915168 (+) 2901 WP_371662963.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27994.67 Da        Isoelectric Point: 7.4698

>NTDB_id=652412 OG960_RS35245 WP_164318350.1 7910228..7911007(-) (dinR/lexA) [Streptomyces sp. NBC_00280]
MTTTADSATITAQDRSQSRLEPVHAMNEATNPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMTEAAIVDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=652412 OG960_RS35245 WP_164318350.1 7910228..7911007(-) (dinR/lexA) [Streptomyces sp. NBC_00280]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCTGAGGGGCCCAAGCGGTCCCTCCCTGGACGACCTCCAGGAATCCGAGCGGACAGCTCGGGACTCA
CAGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAACGACGCGGTTACCCGCCGTCGATGCGCGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACTTCATCGGTCGCACATCAGCTCATGGCTCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCGCATCGCCCGCGCGCCTATGAAGTACGCGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTTGTGGGACGTATCGCCGCCGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTGTTCCCCCTTCCCCGCCAACTGGTGGGGGACGGAGAGCTCTTCGTCCTGAAGGTCGTCGGAGACTCGATGACCGAGGC
CGCGATCGTCGACGGCGACTGGGTCACGGTGCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGG
ACGGCGAAGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTCCTCCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.024

81.467

0.367