Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS32780 Genome accession   NZ_CP108059
Coordinates   7330056..7330730 (+) Length   224 a.a.
NCBI ID   WP_371662588.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7325056..7335730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS32750 (OG960_32810) - 7325127..7325558 (+) 432 WP_371662582.1 lasso peptide biosynthesis B2 protein -
  OG960_RS32755 (OG960_32815) - 7325555..7326520 (+) 966 WP_371662583.1 ATP-binding cassette domain-containing protein -
  OG960_RS32760 (OG960_32820) - 7326517..7327392 (+) 876 WP_371662584.1 ABC transporter permease -
  OG960_RS32765 (OG960_32825) - 7327413..7327862 (+) 450 WP_371662585.1 MauE/DoxX family redox-associated membrane protein -
  OG960_RS32770 (OG960_32830) - 7327868..7328590 (+) 723 WP_371662586.1 DsbA family protein -
  OG960_RS32775 (OG960_32835) mslH 7328587..7329924 (+) 1338 WP_371662587.1 lasso peptide C-terminal Trp epimerase -
  OG960_RS32780 (OG960_32840) vraR 7330056..7330730 (+) 675 WP_371662588.1 response regulator Regulator
  OG960_RS32785 (OG960_32845) - 7330684..7332351 (-) 1668 WP_371662589.1 SDR family oxidoreductase -
  OG960_RS32790 (OG960_32850) - 7332629..7332775 (+) 147 WP_371662590.1 hypothetical protein -
  OG960_RS32795 (OG960_32855) - 7332840..7333739 (-) 900 WP_371662591.1 alpha/beta fold hydrolase -
  OG960_RS32800 (OG960_32860) - 7333797..7334405 (+) 609 WP_371662592.1 TetR/AcrR family transcriptional regulator -
  OG960_RS32805 - 7334697..7335065 (-) 369 WP_371662593.1 transposase -
  OG960_RS32810 - 7335154..7335321 (-) 168 Protein_6485 transposase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23957.91 Da        Isoelectric Point: 5.1201

>NTDB_id=652401 OG960_RS32780 WP_371662588.1 7330056..7330730(+) (vraR) [Streptomyces sp. NBC_00280]
MAEAVRVLIADDQALLRGSFRLLIDSTPGMKAIGEAGDGARAVELARELKPDVVLMDLRMPVMDGIAATREICSDETMAG
VRVLALTMFDMDEYVYPALQAGASGFMLKDVSPADLVAGIRVIATGEGVLAPTVTRRLIANFSRSDETARAAPRLVGLTK
REQEVLVLIANGLSNAEISRQLVISLPTVKTHVSSLLAKVQARDRAQLVIIAYESGLAERGMPT

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652401 OG960_RS32780 WP_371662588.1 7330056..7330730(+) (vraR) [Streptomyces sp. NBC_00280]
ATGGCTGAGGCGGTCCGGGTGCTGATCGCGGACGATCAGGCGCTGTTGCGCGGGAGCTTCCGTCTGCTCATCGATTCCAC
CCCCGGAATGAAGGCGATCGGTGAGGCGGGAGACGGCGCCAGGGCGGTGGAACTCGCCCGGGAACTCAAACCGGACGTCG
TCCTGATGGATCTGCGTATGCCTGTCATGGACGGCATCGCGGCCACCCGGGAGATCTGCTCCGACGAGACGATGGCCGGT
GTACGGGTACTGGCCCTGACGATGTTCGACATGGACGAGTACGTGTACCCGGCCCTGCAGGCGGGCGCGAGCGGATTCAT
GCTGAAGGACGTCTCACCGGCCGACCTGGTCGCCGGCATCCGCGTCATCGCCACCGGCGAGGGCGTACTGGCGCCCACGG
TCACCCGCCGCCTCATCGCGAACTTCTCCCGCAGCGACGAGACGGCTCGGGCGGCCCCCCGGCTCGTCGGGCTCACCAAG
AGGGAACAGGAGGTGCTCGTGCTGATCGCGAACGGACTGTCGAACGCCGAGATCTCCCGGCAGCTGGTGATCAGTCTGCC
GACCGTGAAGACCCACGTGAGCAGCCTCCTCGCCAAGGTGCAGGCCCGTGATCGCGCCCAGCTGGTCATCATCGCCTACG
AGAGCGGCCTCGCCGAGCGCGGGATGCCGACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-120)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.674

95.982

0.362