Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS23255 Genome accession   NZ_CP108059
Coordinates   5260789..5261463 (+) Length   224 a.a.
NCBI ID   WP_371661069.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5255789..5266463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS23245 (OG960_23310) - 5256865..5260257 (-) 3393 WP_371661068.1 S8 family serine peptidase -
  OG960_RS23250 (OG960_23315) - 5260618..5260743 (+) 126 WP_327696002.1 hypothetical protein -
  OG960_RS23255 (OG960_23320) vraR 5260789..5261463 (+) 675 WP_371661069.1 response regulator Regulator
  OG960_RS23260 (OG960_23325) - 5261597..5262325 (+) 729 WP_371661070.1 class I SAM-dependent methyltransferase -
  OG960_RS23265 (OG960_23330) - 5262473..5263663 (+) 1191 WP_371661071.1 alpha/beta hydrolase -
  OG960_RS23270 (OG960_23335) - 5263810..5264700 (-) 891 WP_371661072.1 ricin-type beta-trefoil lectin domain protein -
  OG960_RS23275 (OG960_23340) - 5264941..5266317 (-) 1377 WP_371661073.1 MFS transporter -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24222.15 Da        Isoelectric Point: 8.5714

>NTDB_id=652385 OG960_RS23255 WP_371661069.1 5260789..5261463(+) (vraR) [Streptomyces sp. NBC_00280]
MAIRVVVVDDQDMVRSGFAALLSAQSDIDIVGEAPNGRLGVEVSRHTHADVVLMDVRMPEMDGLEATRQLLDPPRGVVHR
PKVLMLTTFDVDDYIYEALRAGASGFLLKDAPVAQLVQAVRVIAAGDALLAPSITRRLIEDVARRRAAPPRAARLRLNGL
TPRETEVLSLVARGLSNTEIAARLVVAEQTVKTHMTRLLSKLGARDRAQLVVLAYESGLVVPGA

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652385 OG960_RS23255 WP_371661069.1 5260789..5261463(+) (vraR) [Streptomyces sp. NBC_00280]
ATGGCAATTCGGGTGGTCGTCGTCGACGACCAGGACATGGTGCGCTCGGGGTTCGCCGCGCTGCTGTCCGCGCAGAGCGA
CATCGACATCGTGGGCGAGGCACCCAACGGCCGGCTCGGTGTCGAGGTCAGCCGGCACACGCACGCCGACGTCGTGCTGA
TGGACGTACGGATGCCGGAGATGGACGGCCTGGAGGCCACCCGGCAGCTGCTGGACCCGCCGCGCGGTGTCGTCCACCGG
CCGAAGGTGCTCATGCTGACCACCTTCGACGTCGACGACTACATCTACGAGGCACTGCGGGCCGGCGCCAGCGGCTTCCT
CCTCAAGGACGCGCCGGTCGCCCAACTCGTGCAGGCGGTACGGGTGATCGCGGCCGGGGACGCGCTGCTCGCACCGTCCA
TCACCCGGCGCCTCATCGAGGACGTGGCCCGGCGCCGCGCCGCCCCGCCCCGGGCCGCCCGGCTGCGGCTGAACGGCCTC
ACGCCCCGGGAGACGGAGGTTCTGTCGCTGGTGGCGCGGGGCCTGTCGAACACCGAGATCGCGGCACGGCTGGTGGTGGC
CGAGCAGACCGTCAAGACCCATATGACCCGGCTGCTCTCGAAGCTCGGCGCCCGCGACCGGGCCCAACTCGTCGTCCTCG
CCTATGAGTCGGGCCTCGTCGTGCCCGGGGCGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.367

98.661

0.388