Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS15820 Genome accession   NZ_CP108059
Coordinates   3597548..3598216 (-) Length   222 a.a.
NCBI ID   WP_371659896.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592548..3603216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS15815 (OG960_15880) - 3596092..3597315 (-) 1224 WP_371659895.1 exo-alpha-sialidase -
  OG960_RS15820 (OG960_15885) vraR 3597548..3598216 (-) 669 WP_371659896.1 response regulator Regulator
  OG960_RS15825 (OG960_15890) - 3598213..3599505 (-) 1293 WP_371659897.1 sensor histidine kinase -
  OG960_RS15830 (OG960_15895) - 3599574..3601661 (-) 2088 WP_371664930.1 MMPL family transporter -
  OG960_RS15835 (OG960_15900) - 3601842..3602558 (-) 717 WP_371659898.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23313.91 Da        Isoelectric Point: 4.9479

>NTDB_id=652365 OG960_RS15820 WP_371659896.1 3597548..3598216(-) (vraR) [Streptomyces sp. NBC_00280]
MTAIRVLLADDQTLVRAAFAMLVESAPGMEVVGQAGTGRQAVELARSARADLVIMDLRMPDLDGIEATRLIAADEDLAGV
KVLVLTTYDTDEHVVEALRAGASGFLVKDTRPADLLDAIRTVAAGEALLSPGPTARLIARLLRNAEAPTPTGGPECLSER
ERGVLRLVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGMVTPGAG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=652365 OG960_RS15820 WP_371659896.1 3597548..3598216(-) (vraR) [Streptomyces sp. NBC_00280]
GTGACTGCCATTCGCGTACTGCTCGCCGACGACCAGACGCTCGTACGGGCGGCGTTCGCGATGCTCGTCGAGTCGGCGCC
GGGGATGGAGGTGGTGGGGCAGGCGGGTACGGGCCGGCAGGCCGTCGAACTGGCCCGCAGCGCCCGCGCCGACCTGGTCA
TCATGGACCTGCGGATGCCCGACCTCGACGGCATCGAGGCGACCCGGCTGATCGCCGCCGACGAGGACCTGGCGGGCGTG
AAGGTGCTGGTCCTGACGACGTACGACACGGACGAGCACGTGGTGGAGGCGCTGCGCGCGGGCGCGTCGGGCTTCCTGGT
CAAGGACACCAGGCCCGCGGACCTCCTGGACGCCATCCGCACGGTGGCGGCGGGCGAGGCCCTGCTCTCACCGGGCCCCA
CGGCCCGCCTGATAGCCCGTCTGCTGCGCAACGCCGAGGCGCCGACGCCGACGGGCGGCCCCGAATGCCTGTCGGAACGG
GAACGCGGGGTGCTGAGGCTGGTCGCACGGGGCCTCAACAACACGGAGATCGCGGAGACCCTGGGCCTGAGCCCACTGAC
CGCGAAGACCCACGTCAGCCGGATCATGGGCAAGCTGGGCGCGCGGGACCGGGCGCAGCTGGTGATCGTGGCGTACGAGT
CGGGGATGGTGACGCCGGGGGCGGGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-120)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.383

96.396

0.36