Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG960_RS15235 Genome accession   NZ_CP108059
Coordinates   3445730..3447664 (+) Length   644 a.a.
NCBI ID   WP_371659791.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3440730..3452664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS15220 (OG960_15285) - 3441940..3442245 (+) 306 WP_327694709.1 YtxH domain-containing protein -
  OG960_RS15225 (OG960_15290) - 3442387..3443847 (+) 1461 WP_371659789.1 FGGY family carbohydrate kinase -
  OG960_RS15230 (OG960_15295) rcrP 3443997..3445730 (+) 1734 WP_371659790.1 ABC transporter ATP-binding protein Regulator
  OG960_RS15235 (OG960_15300) rcrQ 3445730..3447664 (+) 1935 WP_371659791.1 ABC transporter ATP-binding protein Regulator
  OG960_RS15240 (OG960_15305) - 3447749..3449155 (-) 1407 WP_371659792.1 RNA polymerase sigma factor -
  OG960_RS15245 (OG960_15310) - 3449321..3449986 (+) 666 WP_371659793.1 hypothetical protein -
  OG960_RS15250 (OG960_15315) - 3449983..3450969 (+) 987 WP_371659794.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69987.45 Da        Isoelectric Point: 5.1328

>NTDB_id=652363 OG960_RS15235 WP_371659791.1 3445730..3447664(+) (rcrQ) [Streptomyces sp. NBC_00280]
MAGPMGRMMAGGGPDQHSLDFKVSGKRLLAQFRPERATMYVMLLAVFVSVGLSVVGPKILGRATDLVFSGIIGRQFESGS
TKAEVLASMRERGEGGMADMLSGTDFTPGKGIDFDAVGEVLGLALVVFVFAGLLMLVATRLVNRAVNRTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPMSFFIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQQADPVPGVRPEELRGLVSLE
HVSFRYEPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGAAREREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHGELLEADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=652363 OG960_RS15235 WP_371659791.1 3445730..3447664(+) (rcrQ) [Streptomyces sp. NBC_00280]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGAGGCGGCCCCGATCAGCACTCGCTGGACTTCAAGGTGTCGGGCAAACG
GCTCCTCGCCCAGTTCAGGCCCGAACGGGCCACGATGTACGTGATGCTGCTCGCGGTGTTCGTGAGCGTGGGCCTGTCGG
TGGTGGGCCCGAAGATCCTGGGGCGGGCGACCGACCTGGTCTTCTCCGGCATCATCGGACGGCAGTTCGAGAGTGGCAGT
ACGAAGGCCGAGGTTCTCGCGTCCATGCGGGAGCGCGGCGAGGGCGGCATGGCCGACATGCTCTCCGGTACGGACTTCAC
TCCGGGCAAGGGGATCGACTTCGACGCGGTGGGCGAGGTGCTGGGGCTCGCCCTGGTGGTGTTCGTGTTCGCCGGGCTGC
TGATGCTGGTCGCCACGCGGCTGGTGAACCGGGCGGTCAACCGGACCGTGTACCGGATGCGCGAGGACCTGCAGGCGAAG
CTGTCGAGGCTGCCCCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGTTGCTGACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGATGTCGTTCTTCATCGCCACGCGTGTCGGCAAG
CGGTCGCAGCCACACTTCGTCCAGCAGTGGCGGACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CAACCTCGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCACTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGCATCATGCAGCCACTGATGATGTTCGTGTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTGGGCGGACTGCGGGTCGCTTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCCTCGGCCGAGCGGGTCTTCGAAC
TGCTGGACGCGGAGGAGCAGCAGGCCGACCCGGTGCCGGGGGTACGGCCCGAGGAGCTGCGGGGGCTGGTCTCGCTGGAG
CACGTGTCGTTCCGGTACGAGCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGGCGGTGGAGCCCGGGCACACGGTCGC
GATCGTCGGGCCCACGGGGGCGGGGAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTCTCCGGGGGGCGGA
TCACCCTCGACGGGGTGGACATCGCCGCCATGTCCCGGGACGAACTCCGGGCCGGTATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCCGCGCGTGAGCGTGAGGTGACGCGCGGGGAGATCGA
GGAGGCGGCGCGGGCGGCTCATGCGGACCGTTTCATCCGTACGTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACGGGGGTCAGCGCGGGTGAGAAGCAGCTCATCACGATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCCGTGGACACCCGGACCGAGGTTCTCATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGGAC
GTCGTTCGTGATCGCGCATCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGGCGATCGTGG
AACAGGGGGCGCACGGGGAGCTGTTGGAGGCGGACGGCGCCTATGCACGCTTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGATTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-565)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.546

96.429

0.401