Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG960_RS15230 Genome accession   NZ_CP108059
Coordinates   3443997..3445730 (+) Length   577 a.a.
NCBI ID   WP_371659790.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3438997..3450730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS15195 (OG960_15260) - 3439501..3439881 (-) 381 WP_371659787.1 VOC family protein -
  OG960_RS15200 (OG960_15265) - 3440181..3441062 (+) 882 WP_371659788.1 radical SAM protein -
  OG960_RS15220 (OG960_15285) - 3441940..3442245 (+) 306 WP_327694709.1 YtxH domain-containing protein -
  OG960_RS15225 (OG960_15290) - 3442387..3443847 (+) 1461 WP_371659789.1 FGGY family carbohydrate kinase -
  OG960_RS15230 (OG960_15295) rcrP 3443997..3445730 (+) 1734 WP_371659790.1 ABC transporter ATP-binding protein Regulator
  OG960_RS15235 (OG960_15300) rcrQ 3445730..3447664 (+) 1935 WP_371659791.1 ABC transporter ATP-binding protein Regulator
  OG960_RS15240 (OG960_15305) - 3447749..3449155 (-) 1407 WP_371659792.1 RNA polymerase sigma factor -
  OG960_RS15245 (OG960_15310) - 3449321..3449986 (+) 666 WP_371659793.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62439.80 Da        Isoelectric Point: 6.0339

>NTDB_id=652362 OG960_RS15230 WP_371659790.1 3443997..3445730(+) (rcrP) [Streptomyces sp. NBC_00280]
MLIQLLRTYLKPYKKPIGLLVLLQLLQTCATLYLPTLNADIIDKGVVKGDTGYILLFGAVMIGISLVQVVCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSSV
LVAVVPVLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFGKANHELTEVSLGTGRLLAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PTDPVVELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPKLLARTVGLVPQKPYLFAGSVASNLRYGNPDATDEELWRALEVAQGKGFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALARETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGSHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652362 OG960_RS15230 WP_371659790.1 3443997..3445730(+) (rcrP) [Streptomyces sp. NBC_00280]
GTGCTCATACAACTTCTGCGCACATATCTGAAGCCCTACAAGAAACCCATCGGTCTGCTCGTGCTGCTCCAGCTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCGGACATCATCGACAAGGGCGTGGTGAAGGGCGACACCGGCTACA
TCCTGCTCTTCGGCGCCGTGATGATCGGCATCTCGCTGGTGCAGGTCGTCTGCAACATCGGTGCCGTGTACTACGGCGCC
CGTACGGCGTCGGCGCTCGGCCGGGACGTGCGCGCCGCCGTCTTCGACCGTGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
GCAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTGCAGATGCTCGCGCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGATCGTGCTCGCGCTGGGTCTGGATGTGCCGCTGTCGAGTGTG
CTGGTCGCCGTCGTGCCGGTGCTGGGCATCTGCGTCACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGACGATGCA
GGTACGGCTCGACACCGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTGCGGGACG
AGTACGAGAAGGACCGGTTCGGGAAGGCCAACCACGAGCTGACCGAGGTGTCGCTGGGCACCGGGCGGCTGCTCGCGCTG
ATGTTCCCGATCGTCATGACCGTCGTCAATGTCTCGTCCATCGCCGTGGTGTGGTTCGGTGCTCATCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGTACGTCGTCGAGTGTGGTGCCT
CCGACCGACCCGGTCGTCGAGCTGCGGCGGCACGGGCATCTGGAGATCCGGGGGGCCGGGTTCCGCTATCCGGGCGCCGA
GGAGCCTGTGCTCAAGGCCGTCGACCTGGTGGCGAGGCCCGGTGAGGTGACCGCCGTGATCGGGTCCACGGGGAGTGGGA
AGTCGACGCTGCTGGGGCTCGTACCGCGACTGTTCGACGCGACCGACGGGGAGGTGCTCGTCGACGGCGTGGACGTGGCC
ACCGTGGAGCCGAAGTTGCTGGCCAGGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCGCGGGGAGCGTGGCGAG
CAATCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCGCGCGCTGGAGGTGGCGCAGGGCAAGGGGTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGCACGAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACGGA
CGCGGCCCTGCGGACGGCGCTCGCGCGCGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCCACGATCC
GGGAGGCCGACCGGATCATCGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGCAGCCACCACGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.003

100

0.393