Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG960_RS06830 Genome accession   NZ_CP108059
Coordinates   1588385..1589059 (+) Length   224 a.a.
NCBI ID   WP_371658447.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583385..1594059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS06800 (OG960_06845) - 1583589..1583750 (-) 162 WP_371658443.1 hypothetical protein -
  OG960_RS06805 (OG960_06850) - 1583919..1584380 (+) 462 WP_371658444.1 hypothetical protein -
  OG960_RS06810 (OG960_06855) mug 1584817..1585266 (+) 450 WP_371664841.1 G/U mismatch-specific DNA glycosylase -
  OG960_RS06815 (OG960_06860) - 1585296..1586024 (-) 729 WP_371658445.1 ABC transporter permease -
  OG960_RS06820 (OG960_06865) - 1586028..1586990 (-) 963 WP_371658446.1 ATP-binding cassette domain-containing protein -
  OG960_RS06825 (OG960_06870) - 1587100..1588380 (+) 1281 WP_371664842.1 sensor histidine kinase -
  OG960_RS06830 (OG960_06875) vraR 1588385..1589059 (+) 675 WP_371658447.1 response regulator Regulator
  OG960_RS06835 (OG960_06880) - 1589274..1590431 (+) 1158 WP_371658448.1 ROK family transcriptional regulator -
  OG960_RS06840 (OG960_06885) - 1590513..1591274 (-) 762 WP_371664843.1 GntR family transcriptional regulator -
  OG960_RS06845 (OG960_06890) sigJ 1591386..1592288 (-) 903 WP_371658449.1 RNA polymerase sigma factor SigJ -
  OG960_RS06850 (OG960_06895) - 1592438..1593280 (+) 843 WP_371658450.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 23999.65 Da        Isoelectric Point: 4.8895

>NTDB_id=652349 OG960_RS06830 WP_371658447.1 1588385..1589059(+) (vraR) [Streptomyces sp. NBC_00280]
MPITVLLVDDEPLVRAGLRAVLEAQADIEVVGEAADGAAVIPLVRQLRPDVVAMDVRMPLMDGIEATRAVLRTVAEPPKI
LVITTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLAAEYGSGDGDDGGNRAARAVLERAR
LTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSQVLAKLGARDRTQAVIVAYESGFVAPG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652349 OG960_RS06830 WP_371658447.1 1588385..1589059(+) (vraR) [Streptomyces sp. NBC_00280]
ATGCCCATAACCGTGCTCCTGGTCGACGACGAACCCCTCGTACGGGCCGGTCTGCGGGCCGTGTTGGAGGCTCAGGCCGA
TATCGAGGTCGTCGGGGAGGCCGCGGACGGAGCCGCCGTCATTCCGTTGGTCAGGCAGTTGCGGCCCGATGTGGTCGCCA
TGGATGTGCGGATGCCGTTGATGGACGGGATCGAGGCCACGCGCGCGGTGCTGCGGACGGTGGCGGAGCCGCCGAAGATC
CTGGTGATCACGACGTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGGGCCGGTGCCGACGGGTTTCTGCTCAAGCG
GGCCCGGCCTGCCGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAAGGCGAGTCGCTGCTGTTCCCGGCCTCGGTACGGC
GACTGGCGGCCGAGTACGGGAGCGGCGACGGTGACGACGGCGGGAACCGGGCGGCCCGGGCGGTGCTGGAGCGGGCGCGG
CTGACCGAGCGCGAGGCGGAGGTGCTGCGGCTGATGACCCGGGGGTTGTCCAACGCGGAGATCGCCGCCCGGCTGGTAGT
CGGGACCGAGACCGTGAAGTCGCACGTCAGCCAGGTGCTGGCGAAACTGGGGGCCCGTGATCGTACGCAGGCGGTCATCG
TGGCGTACGAATCCGGGTTCGTGGCGCCCGGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(161-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.271

98.661

0.397