Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG960_RS01525 Genome accession   NZ_CP108059
Coordinates   376396..377367 (-) Length   323 a.a.
NCBI ID   WP_371664791.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00280     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 371396..382367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG960_RS01515 (OG960_01535) - 372942..374450 (+) 1509 WP_371657528.1 glycoside hydrolase family 43 protein -
  OG960_RS01520 (OG960_01540) - 374578..376338 (+) 1761 WP_371657529.1 cellulase family glycosylhydrolase -
  OG960_RS01525 (OG960_01545) cytR 376396..377367 (-) 972 WP_371664791.1 LacI family DNA-binding transcriptional regulator Regulator
  OG960_RS01530 (OG960_01550) - 377762..379108 (+) 1347 WP_371657530.1 jacalin-like lectin -
  OG960_RS01535 (OG960_01555) - 379261..380169 (-) 909 WP_371657531.1 helix-turn-helix transcriptional regulator -
  OG960_RS01540 (OG960_01560) - 380298..381077 (+) 780 WP_371657532.1 MBL fold metallo-hydrolase -
  OG960_RS01545 (OG960_01565) - 381134..382150 (+) 1017 WP_371657533.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35085.06 Da        Isoelectric Point: 5.4570

>NTDB_id=652339 OG960_RS01525 WP_371664791.1 376396..377367(-) (cytR) [Streptomyces sp. NBC_00280]
MAYIAESAGVSVPTVSKVLNGRAGVSDETRARVEELIHRYGYRKPPKNRSKLVELVFRELESMWAVEIIRGVERVARRNK
IGVLVSEFGLQDTPTRTIDDTVERRPQCVLSVAQLSEEERAQLKARGIPFVVFDPNEELPDDVPFVGATNWRGGQAATRH
LLGLGHRHIAMISGPDHPFCLARLAGYTSALTEAGLPVDPDLVVKTLLTREDGYTAARDLLSRPARPTAIFTANDMQAMG
VYQAARELGLSIPQDLSVVGYDDVPAVAWVDPPLTTVHQPLAEMAVAATELALALGRGEDVPQVGVEIATTLTVRESTAP
PKG

Nucleotide


Download         Length: 972 bp        

>NTDB_id=652339 OG960_RS01525 WP_371664791.1 376396..377367(-) (cytR) [Streptomyces sp. NBC_00280]
ATCGCGTACATCGCCGAGTCCGCGGGCGTCTCGGTGCCCACCGTGTCGAAGGTGCTCAACGGCCGGGCCGGGGTGTCGGA
CGAGACGCGGGCCCGCGTCGAGGAGCTGATCCACCGGTACGGCTACCGCAAGCCGCCGAAGAACCGCAGCAAACTCGTGG
AGCTGGTCTTTCGCGAGCTGGAGAGCATGTGGGCCGTGGAGATCATCCGCGGCGTGGAACGGGTGGCCCGCAGGAACAAG
ATCGGTGTCCTGGTGTCGGAGTTCGGGCTCCAGGACACTCCGACCAGAACCATCGACGACACCGTGGAACGCCGCCCGCA
GTGCGTCCTGTCGGTGGCACAGCTGTCGGAGGAGGAGCGGGCCCAACTGAAGGCGAGGGGTATCCCGTTCGTCGTCTTCG
ACCCGAACGAGGAACTCCCCGACGACGTGCCGTTCGTCGGGGCCACCAACTGGAGGGGCGGCCAGGCCGCGACCCGGCAC
CTGCTCGGGCTGGGGCACCGGCACATCGCCATGATCAGCGGTCCTGACCATCCCTTCTGTCTCGCACGGTTGGCCGGCTA
CACCTCCGCACTCACGGAAGCGGGCCTGCCGGTGGATCCGGACCTGGTGGTCAAGACCCTCCTCACCCGTGAGGACGGCT
ACACGGCGGCACGCGACCTGCTCTCGCGGCCCGCGCGCCCCACCGCGATCTTCACCGCCAACGACATGCAGGCCATGGGC
GTCTACCAGGCCGCCCGCGAACTCGGGTTGAGCATCCCGCAGGACCTGAGCGTGGTGGGCTACGACGACGTACCGGCGGT
CGCCTGGGTCGATCCGCCACTGACCACCGTCCACCAGCCCCTGGCGGAGATGGCGGTGGCCGCCACCGAGCTGGCACTGG
CACTGGGCCGTGGCGAGGACGTGCCCCAGGTGGGCGTGGAGATCGCCACCACCCTCACCGTCCGCGAGAGCACGGCCCCG
CCGAAGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-43)

Periplasmic binding protein-like domain (Peripla_BP_3)

(158-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.765

100

0.387
  cytR Vibrio parahaemolyticus RIMD 2210633

35.484

100

0.375