Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHT57_RS45635 Genome accession   NZ_CP108055
Coordinates   9985828..9986850 (-) Length   340 a.a.
NCBI ID   WP_328752875.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 9980828..9991850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS45615 (OHT57_45635) - 9981755..9982693 (+) 939 WP_328752871.1 VOC family protein -
  OHT57_RS45620 (OHT57_45640) - 9982744..9983715 (+) 972 WP_328752872.1 fumarylacetoacetate hydrolase family protein -
  OHT57_RS45625 (OHT57_45645) - 9983712..9984518 (+) 807 WP_328752873.1 SDR family oxidoreductase -
  OHT57_RS45630 (OHT57_45650) - 9984666..9985625 (-) 960 WP_328752874.1 expansin EXLX1 family cellulose-binding protein -
  OHT57_RS45635 (OHT57_45655) cytR 9985828..9986850 (-) 1023 WP_328752875.1 LacI family DNA-binding transcriptional regulator Regulator
  OHT57_RS45640 (OHT57_45660) - 9987105..9988241 (-) 1137 WP_328752876.1 cellulose binding domain-containing protein -
  OHT57_RS45645 (OHT57_45665) - 9988527..9988895 (-) 369 Protein_9033 glycoside hydrolase family 48 protein -
  OHT57_RS45650 (OHT57_45670) - 9989766..9991169 (+) 1404 WP_328752877.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 36755.75 Da        Isoelectric Point: 5.7574

>NTDB_id=652336 OHT57_RS45635 WP_328752875.1 9985828..9986850(-) (cytR) [Streptomyces sp. NBC_00285]
MGTRSPGTPTLEEVAAHAGVGRGTVSRVINNAAGVKDSTRRAVQQAIDELGYVPNLAARSLAGQRSNAVALVLTEPDWRV
FAEPFFSEIVRSLGDALADIGMQLMLTLVRSDADRKRFLEYARGSRVDGVLLLSVHAGDRLPDMLAEARLPTVMLGRRSG
DEYVSYVDADNLGGARSAVSHLVSRGRRTIATITGPLDMDAAQCRLRGYQDALALAGLDSEKTLVAEGDFTQDSGHRAMT
ELLERRPDIDGVLAASDTTAAGALQALRAAGRRVPQDVAVIGFDDFPLAQRTEPRLTTVRQPLEEMGRAMIRLLLDDMEE
PSVAYRHVILRTALVVREST

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=652336 OHT57_RS45635 WP_328752875.1 9985828..9986850(-) (cytR) [Streptomyces sp. NBC_00285]
ATGGGCACGCGAAGCCCCGGCACGCCGACGCTGGAAGAGGTGGCCGCTCACGCCGGGGTGGGGCGGGGCACCGTCTCCCG
TGTCATCAACAACGCGGCGGGCGTGAAGGACTCGACGCGCCGAGCCGTGCAGCAAGCCATCGACGAACTGGGGTATGTCC
CCAATCTGGCGGCCCGCTCGCTGGCCGGCCAGCGAAGCAACGCCGTCGCTCTCGTCCTGACCGAACCCGACTGGAGAGTG
TTCGCGGAACCCTTCTTCTCGGAGATCGTCCGCTCACTCGGCGACGCGCTGGCGGACATCGGGATGCAGCTGATGCTGAC
CCTGGTCCGCTCGGACGCCGACCGCAAGCGCTTCCTGGAGTACGCGCGCGGCAGCCGGGTCGACGGAGTGCTGCTGCTGT
CCGTGCATGCCGGGGACCGGCTGCCGGACATGCTCGCCGAGGCACGGTTGCCGACCGTGATGCTGGGACGCCGCTCGGGC
GACGAGTACGTCAGTTACGTGGACGCGGACAACCTGGGAGGTGCCCGCAGCGCCGTCTCCCACCTGGTGTCACGGGGCCG
CAGGACGATCGCCACCATCACCGGGCCGCTGGACATGGACGCCGCCCAGTGCAGGCTGCGCGGCTATCAGGACGCTCTGG
CGCTGGCCGGTCTCGACAGTGAGAAGACCCTGGTGGCCGAGGGCGACTTCACACAGGACAGCGGGCACCGTGCCATGACG
GAACTGCTCGAACGGCGCCCGGACATCGACGGCGTCCTCGCCGCGTCGGACACCACGGCCGCGGGAGCCCTGCAAGCACT
GCGCGCGGCAGGGCGACGCGTGCCGCAGGACGTCGCCGTGATCGGATTCGACGACTTCCCGCTCGCCCAGCGCACCGAAC
CACGGCTCACCACGGTGCGTCAGCCGCTGGAGGAGATGGGCCGGGCGATGATCCGGCTGCTCCTGGACGACATGGAGGAA
CCGTCGGTGGCCTACCGCCACGTCATCCTCCGTACGGCGCTGGTGGTCCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-340)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.686

99.412

0.365