Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT57_RS39055 Genome accession   NZ_CP108055
Coordinates   8514003..8514692 (+) Length   229 a.a.
NCBI ID   WP_328751536.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8509003..8519692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS39030 (OHT57_39050) - 8510001..8510756 (-) 756 WP_328751530.1 SDR family oxidoreductase -
  OHT57_RS39035 (OHT57_39055) - 8511153..8511611 (+) 459 WP_328751532.1 hypothetical protein -
  OHT57_RS39040 (OHT57_39060) - 8511774..8512160 (+) 387 WP_328751533.1 ribonuclease domain-containing protein -
  OHT57_RS39045 (OHT57_39065) - 8512218..8512418 (-) 201 WP_328751534.1 hypothetical protein -
  OHT57_RS39050 (OHT57_39070) - 8512589..8513848 (+) 1260 WP_328751535.1 histidine kinase -
  OHT57_RS39055 (OHT57_39075) vraR 8514003..8514692 (+) 690 WP_328751536.1 response regulator transcription factor Regulator
  OHT57_RS39060 (OHT57_39080) - 8514735..8515922 (+) 1188 WP_328751537.1 cytochrome P450 -
  OHT57_RS39065 (OHT57_39085) - 8515957..8516979 (-) 1023 WP_328751538.1 Gfo/Idh/MocA family oxidoreductase -
  OHT57_RS39070 (OHT57_39090) - 8517110..8517847 (+) 738 WP_328751539.1 GntR family transcriptional regulator -
  OHT57_RS39075 (OHT57_39095) - 8517989..8519137 (+) 1149 WP_328751540.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24308.75 Da        Isoelectric Point: 4.8494

>NTDB_id=652331 OHT57_RS39055 WP_328751536.1 8514003..8514692(+) (vraR) [Streptomyces sp. NBC_00285]
MTVIRLLLVDDDPLVRAGLSLMMGGADDIEIVGEAADGAEVEAAVDRSRPDVVLMDIRMPSVDGLAATERLRSRPDAPQV
VVLTTFHADEQVLRALRAGAAGFVLKDTPPADILAAVRRVAAGDPVLSPAVTRQLMEHAAGSAADTRRSRARERVAVLND
REREVAIAVGQGLSNAEIAAALYMSVATVKTHVSRVLAKLDLNNRVQIALLAYDAGLLEDDQDSGRPGH

Nucleotide


Download         Length: 690 bp        

>NTDB_id=652331 OHT57_RS39055 WP_328751536.1 8514003..8514692(+) (vraR) [Streptomyces sp. NBC_00285]
ATGACTGTGATCAGACTGCTCCTCGTCGACGACGACCCCCTCGTGCGGGCCGGCCTGTCCCTGATGATGGGCGGAGCCGA
CGACATCGAGATCGTCGGTGAGGCGGCGGACGGTGCCGAGGTGGAGGCTGCCGTCGACCGGAGCCGTCCCGACGTCGTCC
TCATGGACATCCGGATGCCGTCGGTGGACGGTCTCGCGGCCACCGAGCGGCTGCGCAGCCGGCCCGACGCCCCGCAGGTC
GTCGTCCTGACCACGTTCCACGCGGACGAACAGGTCCTGCGCGCCCTGCGCGCGGGTGCCGCGGGATTCGTCCTCAAGGA
CACCCCGCCAGCGGACATCCTGGCCGCCGTCCGCCGCGTCGCCGCCGGCGACCCCGTCCTGTCGCCGGCCGTCACCCGCC
AGTTGATGGAACACGCGGCCGGCTCCGCCGCCGACACCCGGCGCTCACGCGCGCGTGAGCGCGTCGCCGTTCTCAACGAC
CGTGAACGCGAGGTCGCGATCGCGGTCGGGCAGGGCCTGTCGAACGCCGAGATCGCCGCCGCCCTCTACATGAGCGTCGC
CACGGTCAAGACCCACGTCTCCCGCGTCCTGGCCAAGCTGGACCTCAACAACCGGGTGCAGATCGCCCTGTTGGCGTACG
ACGCGGGACTCCTGGAGGACGACCAGGATTCCGGCAGGCCCGGGCACTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.557

96.507

0.362