Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHT57_RS36445 Genome accession   NZ_CP108055
Coordinates   7901071..7901850 (-) Length   259 a.a.
NCBI ID   WP_328751016.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7896071..7906850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS36435 (OHT57_36450) - 7897734..7898582 (+) 849 WP_328751014.1 GNAT family N-acetyltransferase -
  OHT57_RS36440 (OHT57_36455) - 7898896..7900914 (+) 2019 WP_328751015.1 ATP-dependent DNA helicase -
  OHT57_RS36445 (OHT57_36460) dinR/lexA 7901071..7901850 (-) 780 WP_328751016.1 transcriptional repressor LexA Regulator
  OHT57_RS36450 (OHT57_36465) nrdR 7902413..7902991 (+) 579 WP_328751017.1 transcriptional regulator NrdR -
  OHT57_RS36455 (OHT57_36470) - 7903155..7906049 (+) 2895 WP_328751018.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27984.65 Da        Isoelectric Point: 6.9854

>NTDB_id=652323 OHT57_RS36445 WP_328751016.1 7901071..7901850(-) (dinR/lexA) [Streptomyces sp. NBC_00285]
MTTTADSATITAQDRSQGRLEPVHAMNEAANPEGQKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGTSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRI

Nucleotide


Download         Length: 780 bp        

>NTDB_id=652323 OHT57_RS36445 WP_328751016.1 7901071..7901850(-) (dinR/lexA) [Streptomyces sp. NBC_00285]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
TGAAGCCGCGAATCCCGAGGGACAAAAGCGCTCCCTGCCGGGGCGGCCTCCAGGCATCCGTGCAGACAGCTCGGGACTCA
CCGACCGGCAGCGACGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGCCAGGCAGTGGGCCTGTCCAGCACCTCCTCGGTCGCACACCAGCTGATGGCACTGGAACGCAAGGGCTTCCTGCGCCG
CGACCCGCATCGCCCACGCGCGTACGAGGTGCGCGGCTCCGACCAGGGCACGTCGGCGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGACCGATCCTCGCCGAGGAATCCGTCGAGGAC
GTGTTCCCCCTTCCCCGTCAGCTCGTCGGCGATGGTGAGCTGTTCGTCCTCAAGGTGGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCCCACAACTCCGCGTACGAGCCC
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTAGTGGCAGTACTGCGGCGCATCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.498

81.467

0.371