Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHT57_RS21650 Genome accession   NZ_CP108055
Coordinates   4710289..4711287 (-) Length   332 a.a.
NCBI ID   WP_328748121.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4705289..4716287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS21630 (OHT57_21645) - 4705482..4706243 (-) 762 WP_328748118.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHT57_RS21635 (OHT57_21650) - 4706656..4708203 (-) 1548 WP_328748119.1 MFS transporter -
  OHT57_RS21640 (OHT57_21655) - 4708266..4709243 (+) 978 WP_328753279.1 YafY family protein -
  OHT57_RS21645 (OHT57_21660) - 4709271..4709936 (-) 666 WP_328748120.1 TetR family transcriptional regulator -
  OHT57_RS21650 (OHT57_21665) rpoS 4710289..4711287 (-) 999 WP_328748121.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHT57_RS21655 (OHT57_21670) - 4711482..4712012 (+) 531 WP_328748122.1 N-acetyltransferase family protein -
  OHT57_RS21660 (OHT57_21675) - 4712039..4712830 (-) 792 WP_328748123.1 class III extradiol ring-cleavage dioxygenase -
  OHT57_RS21665 (OHT57_21680) - 4712971..4713480 (+) 510 WP_328748124.1 MarR family transcriptional regulator -
  OHT57_RS21670 (OHT57_21685) - 4713584..4715125 (-) 1542 WP_328748125.1 MFS transporter -
  OHT57_RS21675 (OHT57_21690) - 4715245..4715883 (-) 639 WP_328748126.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37196.99 Da        Isoelectric Point: 5.1413

>NTDB_id=652283 OHT57_RS21650 WP_328748121.1 4710289..4711287(-) (rpoS) [Streptomyces sp. NBC_00285]
MATRAVARRKSATGGSTDAARSVRVHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQVLDGIEEAKAD
ASRVELEALVEESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEPAEIAAELESNAARVTDVLDWARDPVSLNMSIDDDGDTQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=652283 OHT57_RS21650 WP_328748121.1 4710289..4711287(-) (rpoS) [Streptomyces sp. NBC_00285]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGGGTCTACCGACGCGGCACGCAGTGTTCGCGTCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTGTCCCAGATCATCGAGGCGGGTGTGTTCGCCCGCCAGGTCCTCGACGGGATCGAGGAGGCCAAGGCCGAC
GCCAGCCGTGTGGAGCTGGAGGCCCTGGTGGAGGAGAGCGAGCGCGCCAAGGACGTGTTCATCCGCTCCAACCTCCGCCT
GGTCGTCGCCGTGGCCCGCCGCTACCCCCGCAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCAGGCCTGG
TGCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGCACCATCCGGCTCCCCGTCCACCTGGTGGAGGAGCTGGGCCGTATCCGCCGCGT
GCAGCGCGAGTTCAACCGCGAGCACGGCCGCGACCCCGAGCCCGCGGAGATCGCCGCCGAGCTCGAGTCCAACGCGGCGC
GCGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCCCTGAACATGTCGATCGACGACGACGGCGACACCCAGTTC
GGCGACCTGCTGGAGGACACGTCGGCGGTCTCCCCGGAGCAGTCCGTCCTGACCCTGCTGCGCAGCGAGGAACTGGACGA
CCTGATCGGGCGACTCGACCAGCGCACGGCCTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACGC
TGACCGAGGTCGGCAAGGAACACGGCCTCACGCGCGAGCGGATCCGGCAGATCGAGAAGCACGCTCTGCTGGAGTTGAAG
AAGCTGGCGCGCGACACCGGGTTCGACGCGGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364