Detailed information NTG0065228

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: BEST7003_RS05925
• Genome accession: NZ_AP012496
• Coordinates: 1181864..1182817 (+)
• Length: 317 a.a.
• NCBI ID: WP_003245494.1
• Uniprot ID: A0AAE2SG99
• Organism: Bacillus subtilis BEST7003
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1176864..1187817

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEST7003_RS05900 (BEST7003_1111)	argF	1178696..1179655 (+)	960	WP_003232980.1	ornithine carbamoyltransferase	-
BEST7003_RS05905 (BEST7003_1112)	yjzC	1179741..1179920 (+)	180	WP_003245356.1	YjzC family protein	-
BEST7003_RS05910 (BEST7003_1113)	yjzD	1179966..1180151 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
BEST7003_RS05915 (BEST7003_1114)	-	1180400..1181134 (+)	735	WP_003245223.1	hypothetical protein	-
BEST7003_RS05920 (BEST7003_1115)	-	1181216..1181773 (+)	558	WP_003232974.1	hypothetical protein	-
BEST7003_RS05925 (BEST7003_1116)	med	1181864..1182817 (+)	954	WP_003245494.1	transcriptional regulator Med	Regulator
BEST7003_RS05930 (BEST7003_1117)	comZ	1182832..1183023 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
BEST7003_RS05935 (BEST7003_1118)	yjzB	1183053..1183292 (-)	240	WP_003232972.1	spore coat protein YjzB	-
BEST7003_RS05940 (BEST7003_1119)	fabH	1183457..1184395 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
BEST7003_RS05945 (BEST7003_1120)	fabF	1184418..1185659 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
BEST7003_RS05950 (BEST7003_1121)	yjaZ	1185735..1186520 (+)	786	WP_003232967.1	DUF2268 domain-containing protein	-
BEST7003_RS05955 (BEST7003_1122)	appD	1186712..1187698 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.80 Da
• Isoelectric Point: 4.5457

>NTDB_id=65228 BEST7003_RS05925 WP_003245494.1 1181864..1182817(+) (med) [Bacillus subtilis BEST7003]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=65228 BEST7003_RS05925 WP_003245494.1 1181864..1182817(+) (med) [Bacillus subtilis BEST7003]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	100	100	1