Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT57_RS17735 Genome accession   NZ_CP108055
Coordinates   3820305..3820970 (-) Length   221 a.a.
NCBI ID   WP_328747393.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3815305..3825970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS17710 (OHT57_17725) - 3816163..3817278 (-) 1116 WP_328747388.1 abortive phage infection protein -
  OHT57_RS17715 (OHT57_17730) bla 3817363..3818307 (+) 945 WP_328747389.1 class A beta-lactamase -
  OHT57_RS17720 (OHT57_17735) - 3818282..3818725 (-) 444 WP_328747390.1 protein phosphatase -
  OHT57_RS17725 (OHT57_17740) - 3818807..3819334 (+) 528 WP_328747391.1 SigE family RNA polymerase sigma factor -
  OHT57_RS17730 (OHT57_17745) - 3819331..3820245 (+) 915 WP_328747392.1 hypothetical protein -
  OHT57_RS17735 (OHT57_17750) vraR 3820305..3820970 (-) 666 WP_328747393.1 response regulator transcription factor Regulator
  OHT57_RS17740 (OHT57_17755) - 3820967..3822145 (-) 1179 WP_328753228.1 histidine kinase -
  OHT57_RS17745 (OHT57_17760) - 3822256..3824340 (-) 2085 WP_328747394.1 MMPL family transporter -
  OHT57_RS17750 (OHT57_17765) - 3824480..3825175 (-) 696 WP_328747395.1 TerB family tellurite resistance protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23467.15 Da        Isoelectric Point: 4.7385

>NTDB_id=652274 OHT57_RS17735 WP_328747393.1 3820305..3820970(-) (vraR) [Streptomyces sp. NBC_00285]
MTIRVLLADDQTLVRAAFAMLVESARDMQVVGEAGSGREAVGAAREVRPDLVVMDIRMPDLDGIEATRLIAADEELAGVR
VLVLTTYDTDENIVEALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTARLIERFLRSPSVPVPGGGPECLSDRE
REVLALVARGLNNTEIAGALGLSPLTAKTHVSRIMGKLGVRDRAQLVIVAYESGMVTPKTM

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652274 OHT57_RS17735 WP_328747393.1 3820305..3820970(-) (vraR) [Streptomyces sp. NBC_00285]
ATGACCATCCGCGTACTGCTCGCCGACGACCAGACGCTGGTGCGGGCCGCGTTCGCCATGCTCGTCGAGTCGGCGCGGGA
CATGCAGGTCGTCGGCGAGGCGGGCAGCGGGCGGGAGGCCGTGGGAGCGGCCCGCGAAGTGCGGCCCGACCTGGTGGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTCATCGCGGCCGACGAGGAGCTCGCCGGGGTGCGG
GTGTTGGTCCTCACCACGTACGACACCGACGAGAACATCGTCGAGGCGCTGCGCGCGGGGGCCTCCGGTTTCCTGGTCAA
GGACACCCGGCCGGCCGAACTCCTCGACGCCATCCGCACGGTGGCGGCCGGTGAGGCGCTGCTGTCCCCGGGGCCGACGG
CACGGCTGATCGAACGGTTCCTGCGCAGCCCGTCGGTGCCGGTGCCGGGCGGTGGGCCCGAGTGCCTGTCCGACCGGGAG
CGCGAGGTGCTGGCCCTGGTCGCGCGGGGCCTCAACAACACGGAGATCGCAGGGGCGTTGGGCCTCAGCCCGCTCACCGC
GAAGACCCACGTCAGCCGGATCATGGGCAAGCTGGGGGTGCGGGACCGGGCACAACTGGTCATCGTGGCGTACGAGTCGG
GGATGGTGACTCCGAAGACCATGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.426

97.738

0.376