Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHT57_RS17470 Genome accession   NZ_CP108055
Coordinates   3757074..3759002 (+) Length   642 a.a.
NCBI ID   WP_328747341.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3752074..3764002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS17455 (OHT57_17470) - 3753253..3753558 (+) 306 WP_328747338.1 YtxH domain-containing protein -
  OHT57_RS17460 (OHT57_17475) - 3753687..3755126 (+) 1440 WP_328747339.1 FGGY family carbohydrate kinase -
  OHT57_RS17465 (OHT57_17480) rcrP 3755341..3757074 (+) 1734 WP_328747340.1 ABC transporter ATP-binding protein Regulator
  OHT57_RS17470 (OHT57_17485) rcrQ 3757074..3759002 (+) 1929 WP_328747341.1 ABC transporter ATP-binding protein Regulator
  OHT57_RS17475 (OHT57_17490) - 3759190..3760479 (-) 1290 WP_328747342.1 RNA polymerase sigma factor -
  OHT57_RS17480 (OHT57_17495) dnaG 3760694..3762595 (-) 1902 WP_328747343.1 DNA primase -
  OHT57_RS17485 (OHT57_17500) - 3762703..3763968 (-) 1266 WP_328747344.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69701.21 Da        Isoelectric Point: 6.3649

>NTDB_id=652273 OHT57_RS17470 WP_328747341.1 3757074..3759002(+) (rcrQ) [Streptomyces sp. NBC_00285]
MAGPMGRMMAGGGPENRSLDFKVSGRRLLTHFKPERLTLYAMLACVTVSVGLNVVGPKILGKATDLVFAGIIGRQMPSGA
SKEEVLAGMRSRGEGQVADMLRSTDFTPGKGIDFTTVGQVLLSAVGVFLVAGLLMAVATRLVNRTVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQDESAAQFAEQNDALYEAGFKAQFNSGVMQPLMMFISNLNYVLVA
VVGGLRVATGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPVPALRPEELRGRVALE
HVSFRYDPEKPLIDDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGTHTDLLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=652273 OHT57_RS17470 WP_328747341.1 3757074..3759002(+) (rcrQ) [Streptomyces sp. NBC_00285]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGCGGCGGCCCCGAGAACCGCTCGCTGGACTTCAAGGTGTCCGGCAGGCG
ACTGCTCACCCACTTCAAGCCGGAACGGCTCACCCTCTACGCGATGCTGGCCTGCGTCACAGTGAGCGTGGGCCTCAACG
TGGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCCGGGATCATCGGACGGCAGATGCCCTCCGGCGCC
AGCAAGGAGGAAGTCCTCGCGGGGATGCGGAGCCGCGGCGAGGGACAGGTCGCGGACATGCTCCGCAGCACCGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCACCGTGGGGCAGGTCCTGCTGTCCGCGGTCGGGGTGTTCCTGGTCGCCGGTCTAC
TGATGGCGGTGGCGACACGGCTGGTCAACAGGACCGTCAACCGCACGATGTTCCGGATGCGCGAGGACGTCCAGACCAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTCCTGTCCCGGGCCACGAACGACATCGACAA
CATCGGGCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTCACCATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTCGCCCTGGTCGCGCTGGTCACCGTGCCGCTGTCGTTCGTCGTCGCCACTCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGCCGCCAGGACGAGTCGGCCGCGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCATCTCGAACCTCAACTACGTGCTGGTGGCG
GTCGTGGGCGGCCTGCGGGTCGCGACCGGCTCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCCATGCCGCTCACGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTCGACGCGGAGGAGCAGGAGGCGGATCCGGTACCGGCGCTCAGGCCCGAGGAACTGCGCGGGCGGGTGGCCCTGGAG
CATGTCTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGACGACCTCTCGCTGAAGGTCGAACCCGGGCACACGGTCGC
GATCGTCGGCCCGACCGGAGCCGGAAAGACCACCCTGGTCAACCTGCTCATGCGGTTCTACGACGTCTCGGGCGGCCGCA
TCACCCTGGACGGCGTGGACATCGCCCGGATGTCCCGGGACGAGCTGCGGGCCGGGATCGGGATGGTGCTGCAGGACACC
TGGCTGTTCGGGGGGACCATCGCGGAGAACATCGCGTACGGCGCCTCCCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCCCACGCGGACCGGTTCGTGCGGACGCTTCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTGGACGAG
GCGACCTCGTCGGTCGACACGCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGTTGGCCCACGGGCGGACGTCGTT
CGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCGATCGTCGAACAGG
GCACGCACACCGACCTGTTGGCGGCGGGCGGGGCGTACGCGCGGCTGTACCAGGCGCAGTTCGCGCAGGCGGTCGCGGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(44-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.67

84.891

0.371