Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHT57_RS17465 Genome accession   NZ_CP108055
Coordinates   3755341..3757074 (+) Length   577 a.a.
NCBI ID   WP_328747340.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00285     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3750341..3762074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHT57_RS17435 (OHT57_17450) - 3750660..3752549 (+) 1890 WP_328747337.1 tyrosine-type recombinase/integrase -
  OHT57_RS17455 (OHT57_17470) - 3753253..3753558 (+) 306 WP_328747338.1 YtxH domain-containing protein -
  OHT57_RS17460 (OHT57_17475) - 3753687..3755126 (+) 1440 WP_328747339.1 FGGY family carbohydrate kinase -
  OHT57_RS17465 (OHT57_17480) rcrP 3755341..3757074 (+) 1734 WP_328747340.1 ABC transporter ATP-binding protein Regulator
  OHT57_RS17470 (OHT57_17485) rcrQ 3757074..3759002 (+) 1929 WP_328747341.1 ABC transporter ATP-binding protein Regulator
  OHT57_RS17475 (OHT57_17490) - 3759190..3760479 (-) 1290 WP_328747342.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62826.06 Da        Isoelectric Point: 6.0998

>NTDB_id=652272 OHT57_RS17465 WP_328747340.1 3755341..3757074(+) (rcrP) [Streptomyces sp. NBC_00285]
MLIRLLRTYFRPYKKPIALLVLLQFLQTCATLYLPTLNANIIDNGVVKGNTGYILGYGAVMIGISLVQVVCNIGAVFYGA
RTAAALGRDLRAAVFDRVQSFSAREVGHFGAPTLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPTLGICVTLIVRRLRPLFRSMQVRLDTVNRVLREQITGNRVIRAFVRDEYEQDRFRKANTDLTDISLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDTTEGEVLVDGIEVS
TVEPRLLARTVGLVPQKPYLFAGTVATNLRYGKPDATDEELWQALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETSEATVVIVAQRVATIRDADRIVVLDEGRVVGTGTHRELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=652272 OHT57_RS17465 WP_328747340.1 3755341..3757074(+) (rcrP) [Streptomyces sp. NBC_00285]
GTGCTCATACGACTTCTGCGGACCTACTTCAGGCCCTACAAGAAACCCATCGCCCTTCTGGTGCTGCTCCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACGCTCAACGCGAACATCATCGACAACGGCGTCGTGAAGGGGAACACCGGCTACA
TCCTCGGCTACGGCGCCGTCATGATCGGCATCTCGCTGGTGCAGGTCGTGTGCAACATCGGGGCCGTGTTCTACGGCGCC
CGGACCGCCGCCGCGCTCGGCCGGGACCTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCGTTCTCGGCGCGCGAGGTCGG
TCACTTCGGCGCGCCCACCCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCCATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTCGATGTGCCGCTGTCCGGAGTC
CTGGTGGCCGTGGTGCCGACGCTGGGCATCTGTGTGACGTTGATCGTGCGGCGGCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGCGGCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGGGCGTTCGTGCGGGACG
AGTACGAGCAGGACCGGTTCCGCAAGGCGAACACCGACCTGACGGACATCTCGCTCAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCCGTGGTGATGACGACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGAGACGTCGTCGTCCGTGGTGCCG
CCGGTGGCCCCGGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGATCCGCGGGGCGGGCTTCCGCTATCCGGGCGCCGA
GGAGCCGGTGCTCAGGACGATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGGTCCCCCGGCTGTTCGACACGACCGAGGGCGAGGTTCTCGTCGACGGCATCGAGGTGTCG
ACCGTCGAGCCGAGGCTGCTGGCCAGGACCGTCGGGCTCGTGCCGCAGAAGCCGTATCTCTTCGCAGGCACGGTCGCCAC
CAACCTGCGCTACGGCAAGCCGGACGCCACCGACGAGGAACTGTGGCAGGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGCAGTTGGAGAACGGGCTGGACTCCCCCATCGCGCAGGGTGGCACGAACGTCTCCGGTGGTCAGCGGCAGCGGCTC
GCCATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCCCTTCGGGCGGCGCTCGCCGAGGAGACCTCGGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGACGCCGACCGGATCGTCGTCCTGGACGAGGGCCGGGTCGTCGGCACCGGCACCCACCGCGAGCTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.587

100

0.399