Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   L6D13_RS15285 Genome accession   NZ_CP091534
Coordinates   3123383..3124012 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 537-20     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3118383..3129012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6D13_RS15270 (L6D13_15270) helD 3118625..3120679 (-) 2055 WP_000420537.1 DNA helicase IV -
  L6D13_RS15275 (L6D13_15275) yccF 3120802..3121248 (+) 447 WP_001261235.1 YccF domain-containing protein -
  L6D13_RS15280 (L6D13_15280) yccS 3121258..3123420 (+) 2163 WP_000875044.1 YccS family putative transporter -
  L6D13_RS15285 (L6D13_15285) sxy/tfoX 3123383..3124012 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  L6D13_RS15290 (L6D13_15290) sulA 3124231..3124740 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  L6D13_RS15295 (L6D13_15295) ompA 3125097..3126149 (+) 1053 WP_001361736.1 porin OmpA -
  L6D13_RS15300 (L6D13_15300) matP 3126225..3126677 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  L6D13_RS15305 (L6D13_15305) ycbZ 3126863..3128623 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=652231 L6D13_RS15285 WP_000839153.1 3123383..3124012(-) (sxy/tfoX) [Escherichia coli strain 537-20]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=652231 L6D13_RS15285 WP_000839153.1 3123383..3124012(-) (sxy/tfoX) [Escherichia coli strain 537-20]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1