Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHT21_RS39890 Genome accession   NZ_CP108054
Coordinates   8821599..8822264 (-) Length   221 a.a.
NCBI ID   WP_328773115.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00286     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 8816599..8827264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - vraR 8821599..8822264 (-) 666 - - Regulator

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23680.28 Da        Isoelectric Point: 4.8810

>NTDB_id=652229 OHT21_RS39890 WP_328773115.1 8821599..8822264(-) (vraR) [Streptomyces sp. NBC_00286]
MPVTVLLVDDEPLVRAGLRAVLEAQHDLEVVGEAADGAAVIPLVRQLRPEVVLMDVRMPLMDGIEATRAVLRTVDRPPKI
VVVTTFENDEYVYEALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEYGDGGGGNPTARAVLERASLTE
REAEVLRLMTRGLSNAEIAERLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=652229 OHT21_RS39890 WP_328773115.1 8821599..8822264(-) (vraR) [Streptomyces sp. NBC_00286]
GTGCCGGTCACCGTTCTGCTCGTCGATGACGAACCTCTCGTACGCGCCGGTCTGCGCGCTGTTCTGGAGGCGCAGCACGA
CCTCGAGGTCGTCGGGGAGGCCGCCGACGGCGCCGCGGTGATCCCGCTGGTCCGCCAGCTGCGGCCCGAAGTCGTCCTGA
TGGACGTCCGGATGCCGCTCATGGACGGCATCGAGGCCACGCGGGCCGTGCTGCGGACCGTCGACCGGCCGCCGAAGATC
GTCGTGGTGACAACCTTCGAGAACGACGAGTACGTGTACGAGGCGCTGCGCGCGGGCGCCGACGGTTTCCTGCTGAAGCG
GGCGCGGCCCGCGGAGATCGTACACGCGGTGCGACTGGTCGCCGAGGGCGAGTCTCTGCTGTTCCCCGCGTCGGTGCGGC
AACTGGCCGCCGAGTACGGGGACGGTGGTGGCGGGAATCCCACGGCGCGGGCGGTGCTGGAACGGGCGTCTCTGACCGAG
CGCGAGGCGGAGGTACTACGGCTGATGACCCGCGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTGGTGGTCGGCACCGA
GACGGTGAAGTCCCATGTCAGCGCCGTACTGGCGAAGTTGGGGGCGCGGGACCGGACCCAGGCGGTGATCGCGGCGTACG
AGTCGGGATTCGTGGCCCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.639

99.095

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.362